Variant report

Variant	rs7096646
Chromosome Location	chr10:26446669-26446670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26164441..26165136-chr10:26446516..26447036,2	MCF-7	breast:
2	chr10:26331732..26332346-chr10:26446585..26447295,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10082469	0.97[EUR][1000 genomes]
rs10508714	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10764598	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828953	0.97[EUR][1000 genomes]
rs10828955	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11014924	0.87[EUR][1000 genomes]
rs11014925	0.88[EUR][1000 genomes]
rs11014934	0.87[EUR][1000 genomes]
rs11014976	0.95[ASN][1000 genomes]
rs11014979	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014984	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11593041	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11598861	0.97[EUR][1000 genomes]
rs11819592	0.97[EUR][1000 genomes]
rs12246202	0.95[EUR][1000 genomes]
rs12247347	0.93[ASN][1000 genomes]
rs12247650	0.88[EUR][1000 genomes]
rs12252534	0.87[EUR][1000 genomes]
rs12258401	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12258453	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12262670	0.88[EUR][1000 genomes]
rs12262728	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12263990	0.97[EUR][1000 genomes]
rs12266221	0.92[EUR][1000 genomes]
rs12266309	0.95[ASN][1000 genomes]
rs12267297	0.88[EUR][1000 genomes]
rs12411554	0.95[ASN][1000 genomes]
rs12572400	0.89[EUR][1000 genomes]
rs12572695	0.87[EUR][1000 genomes]
rs12766250	0.88[EUR][1000 genomes]
rs12768268	0.88[EUR][1000 genomes]
rs12770421	0.90[EUR][1000 genomes]
rs1339808	0.86[EUR][1000 genomes]
rs1339809	0.86[EUR][1000 genomes]
rs1339812	0.86[EUR][1000 genomes]
rs1339813	0.88[EUR][1000 genomes]
rs1339814	0.88[EUR][1000 genomes]
rs1339815	0.89[EUR][1000 genomes]
rs1339816	0.89[EUR][1000 genomes]
rs1342319	0.96[ASN][1000 genomes]
rs1342320	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1361376	0.86[EUR][1000 genomes]
rs1402437	0.97[EUR][1000 genomes]
rs1416860	0.88[EUR][1000 genomes]
rs1546701	0.95[EUR][1000 genomes]
rs17813720	0.86[EUR][1000 genomes]
rs1856603	0.87[EUR][1000 genomes]
rs1915478	0.88[EUR][1000 genomes]
rs1935484	0.95[ASN][1000 genomes]
rs1949616	0.88[EUR][1000 genomes]
rs2090797	0.94[EUR][1000 genomes]
rs2096176	0.98[ASN][1000 genomes]
rs2176941	0.97[EUR][1000 genomes]
rs2226129	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2368157	0.88[AFR][1000 genomes]
rs2368158	0.98[ASN][1000 genomes]
rs35137356	0.93[EUR][1000 genomes]
rs3740231	0.95[ASN][1000 genomes]
rs3740232	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758447	0.95[ASN][1000 genomes]
rs3758448	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758449	0.98[ASN][1000 genomes]
rs4539209	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4575167	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6482531	0.92[ASN][1000 genomes]
rs6482532	0.95[ASN][1000 genomes]
rs7072451	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7079125	0.97[ASN][1000 genomes]
rs7079780	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7081905	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082411	0.96[ASN][1000 genomes]
rs7084000	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7085103	0.98[ASN][1000 genomes]
rs7091566	0.99[ASN][1000 genomes]
rs7093989	1.00[ASN][1000 genomes]
rs7095559	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7476324	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895318	0.97[EUR][1000 genomes]
rs7895734	0.97[EUR][1000 genomes]
rs7899450	0.88[EUR][1000 genomes]
rs7899567	0.88[EUR][1000 genomes]
rs7913502	0.97[EUR][1000 genomes]
rs7920488	0.93[ASN][1000 genomes]
rs949896	0.86[EUR][1000 genomes]
rs9629915	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26438000-26451000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26444600-26447000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26446400-26446800	Weak transcription	Esophagus	oesophagus
5	chr10:26446600-26446800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr10:26446600-26447000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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