Variant report

Variant	rs2096176
Chromosome Location	chr10:26433366-26433367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10508710	0.98[GIH][hapmap]
rs10508714	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10764598	0.93[ASN][1000 genomes]
rs10828955	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11014931	0.98[GIH][hapmap]
rs11014933	0.98[GIH][hapmap]
rs11014934	0.85[GIH][hapmap]
rs11014936	0.98[GIH][hapmap]
rs11014959	0.96[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs11014976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014979	0.93[ASN][1000 genomes]
rs11014984	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11593041	0.93[ASN][1000 genomes]
rs11593128	0.98[GIH][hapmap]
rs12247347	0.91[ASN][1000 genomes]
rs12247680	0.96[EUR][1000 genomes]
rs12258401	0.93[ASN][1000 genomes]
rs12258453	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];0.93[ASN][1000 genomes]
rs12261502	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs12262670	0.87[GIH][hapmap]
rs12262728	0.93[ASN][1000 genomes]
rs12263990	0.85[GIH][hapmap]
rs12266309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12267078	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12411554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12569739	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes]
rs12572400	0.85[GIH][hapmap]
rs12765561	0.83[CEU][hapmap]
rs12767805	0.98[GIH][hapmap]
rs12773856	0.98[GIH][hapmap]
rs12774270	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1339809	0.85[GIH][hapmap]
rs1339812	0.87[GIH][hapmap]
rs1339814	0.85[GIH][hapmap]
rs1339816	0.85[GIH][hapmap]
rs1342319	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1342320	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1521029	0.98[GIH][hapmap]
rs1521030	0.98[GIH][hapmap]
rs1521032	0.98[GIH][hapmap]
rs1521033	0.98[GIH][hapmap]
rs1521034	0.98[GIH][hapmap]
rs1539323	0.94[EUR][1000 genomes]
rs1546701	0.85[GIH][hapmap]
rs17666079	0.81[CEU][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap]
rs17739425	0.87[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1818747	0.95[EUR][1000 genomes]
rs1935484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2139795	0.98[GIH][hapmap]
rs2226129	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2368157	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2368158	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34879813	0.98[GIH][hapmap]
rs3740231	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3740232	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs3758441	0.98[GIH][hapmap]
rs3758447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758448	0.93[ASN][1000 genomes]
rs3758449	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs3817419	0.98[GIH][hapmap]
rs3824700	0.95[GIH][hapmap]
rs4539209	0.93[ASN][1000 genomes]
rs4575167	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4631780	0.98[GIH][hapmap]
rs5012431	0.98[GIH][hapmap]
rs61840836	0.96[EUR][1000 genomes]
rs6482531	0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6482532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7072451	0.93[ASN][1000 genomes]
rs7079125	0.95[ASN][1000 genomes]
rs7079780	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7080516	0.97[EUR][1000 genomes]
rs7081905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7082411	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7084000	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7085103	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091566	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7093989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7095559	1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.82[MKK][hapmap];0.93[ASN][1000 genomes]
rs7096646	0.98[ASN][1000 genomes]
rs7097387	0.95[GIH][hapmap]
rs7476324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7898544	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs7899567	0.85[GIH][hapmap]
rs7899880	0.98[GIH][hapmap]
rs7903895	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7907187	0.97[EUR][1000 genomes]
rs7908466	0.81[AFR][1000 genomes]
rs7912435	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7913733	0.98[GIH][hapmap]
rs7916320	0.98[GIH][hapmap]
rs7920488	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26402000-26436200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26428000-26436400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links