Variant report

Variant	rs3740232
Chromosome Location	chr10:26462790-26462791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10082469	0.95[EUR][1000 genomes]
rs10508710	0.85[GIH][hapmap]
rs10508714	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10764598	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828953	0.95[EUR][1000 genomes]
rs10828955	0.88[ASN][1000 genomes]
rs11014924	0.85[EUR][1000 genomes]
rs11014925	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11014931	0.85[GIH][hapmap]
rs11014933	0.85[GIH][hapmap]
rs11014934	0.91[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11014936	0.85[GIH][hapmap]
rs11014959	0.85[GIH][hapmap]
rs11014976	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11014979	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014993	0.85[ASW][hapmap]
rs11593041	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593128	0.85[GIH][hapmap]
rs11598861	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs11819592	0.95[EUR][1000 genomes]
rs12246202	0.87[CEU][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs12247347	0.98[ASN][1000 genomes]
rs12247650	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs12252534	0.86[EUR][1000 genomes]
rs12258401	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258453	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261502	0.85[GIH][hapmap]
rs12262670	0.91[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12262728	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263990	1.00[CEU][hapmap];0.98[GIH][hapmap];0.94[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.95[EUR][1000 genomes]
rs12266221	0.90[EUR][1000 genomes]
rs12266309	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12267297	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs12411554	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs12569739	0.85[GIH][hapmap]
rs12572400	0.91[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs12572695	0.85[EUR][1000 genomes]
rs12766250	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs12767805	0.85[GIH][hapmap]
rs12768268	0.86[EUR][1000 genomes]
rs12770421	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs12773856	0.85[GIH][hapmap]
rs1339808	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1339809	0.86[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs1339812	0.91[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs1339813	0.86[EUR][1000 genomes]
rs1339814	0.91[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs1339815	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs1339816	0.91[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs1342319	0.91[ASN][1000 genomes]
rs1342320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361376	0.84[EUR][1000 genomes]
rs1402437	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1416860	0.91[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs1521029	0.84[GIH][hapmap]
rs1521030	0.85[GIH][hapmap]
rs1521032	0.85[GIH][hapmap]
rs1521033	0.85[GIH][hapmap]
rs1521034	0.85[GIH][hapmap]
rs1546701	0.96[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs17666079	0.81[GIH][hapmap]
rs17739425	0.85[GIH][hapmap]
rs17813720	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1856603	0.86[EUR][1000 genomes]
rs1915478	0.86[EUR][1000 genomes]
rs1935484	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1949616	0.86[EUR][1000 genomes]
rs2090797	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs2096176	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs2139795	0.85[GIH][hapmap]
rs2176941	0.95[EUR][1000 genomes]
rs2226129	0.93[ASN][1000 genomes]
rs2368158	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs34879813	0.85[GIH][hapmap]
rs35137356	0.92[EUR][1000 genomes]
rs3740231	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3758441	0.85[GIH][hapmap]
rs3758447	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs3758448	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758449	0.91[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs3817419	0.85[GIH][hapmap]
rs3824700	0.82[GIH][hapmap]
rs4539209	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4575167	0.92[ASN][1000 genomes]
rs4631780	0.85[GIH][hapmap]
rs5012431	0.85[GIH][hapmap]
rs6482531	0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6482532	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7072451	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079125	0.92[ASN][1000 genomes]
rs7079780	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7082411	0.91[ASN][1000 genomes]
rs7084000	0.95[ASN][1000 genomes]
rs7085103	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7091566	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs7093989	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7095559	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096646	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7097387	0.83[GIH][hapmap]
rs7476324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895318	1.00[CEU][hapmap];0.84[YRI][hapmap];0.95[EUR][1000 genomes]
rs7895734	0.95[EUR][1000 genomes]
rs7899450	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7899567	0.91[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7899880	0.85[GIH][hapmap]
rs7913502	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7913733	0.85[GIH][hapmap]
rs7916320	0.85[GIH][hapmap]
rs7920488	0.98[ASN][1000 genomes]
rs949896	0.84[EUR][1000 genomes]
rs9629915	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26453800-26466800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26459400-26466800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:26460800-26462800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:26461000-26464600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:26461400-26466800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:26461600-26464200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:26461800-26464400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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