Variant report

Variant	rs11014993
Chromosome Location	chr10:26483183-26483184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10508714	0.86[CHB][hapmap];0.91[YRI][hapmap];0.83[ASN][1000 genomes]
rs10508715	0.90[CHB][hapmap]
rs11014996	0.94[CHB][hapmap]
rs12258453	0.85[ASW][hapmap]
rs1330572	0.90[CHB][hapmap]
rs2236418	0.90[CHB][hapmap]
rs2839670	0.90[CHB][hapmap]
rs2839671	0.90[CHB][hapmap]
rs3740232	0.85[ASW][hapmap]
rs7095559	0.92[ASW][hapmap]
rs8190598	0.88[CHB][hapmap]
rs8190647	0.88[CHB][hapmap]
rs994502	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11014993	ABI1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26474000-26491000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26483000-26483200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:26483000-26486600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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