Variant report

Variant	rs8190598
Chromosome Location	chr10:26507595-26507596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10508715	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014993	0.88[CHB][hapmap]
rs11014995	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014996	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015015	0.80[EUR][1000 genomes]
rs11819063	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12243037	0.92[CEU][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1330572	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2236417	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2236418	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2839669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2839670	0.92[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2839671	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758446	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749100	0.80[EUR][1000 genomes]
rs61839365	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6482538	0.86[YRI][hapmap]
rs7071922	0.85[ASN][1000 genomes]
rs7072136	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7908975	0.84[YRI][hapmap]
rs8190582	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8190647	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8190706	0.83[CEU][hapmap]
rs994502	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26502800-26508600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr10:26503000-26507800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr10:26503600-26507600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chr10:26503600-26507600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr10:26503800-26507600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
6	chr10:26505200-26510800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
7	chr10:26505400-26507800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr10:26505400-26507800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
9	chr10:26505400-26508200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
10	chr10:26505600-26510000	Bivalent/Poised TSS	Fetal Brain Female	brain
11	chr10:26506200-26507800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr10:26506400-26507600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:26506400-26507600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr10:26506600-26507600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:26506600-26507600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:26506600-26507600	Bivalent Enhancer	Fetal Heart	heart
17	chr10:26506800-26507600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr10:26506800-26507600	Enhancers	Pancreas	Pancrea
19	chr10:26507000-26507600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
20	chr10:26507000-26507800	Bivalent Enhancer	Brain Hippocampus Middle	brain
21	chr10:26507200-26507600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
22	chr10:26507200-26507600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:26507200-26507600	Bivalent Enhancer	Right Ventricle	heart
24	chr10:26507400-26507600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
25	chr10:26507400-26507600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr10:26507400-26507600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
27	chr10:26507400-26507600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:26507400-26507600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:26507400-26507600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:26507400-26507600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
31	chr10:26507400-26507600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:26507400-26507600	Bivalent Enhancer	Fetal Brain Male	brain
33	chr10:26507400-26507800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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