Variant report

Variant	rs7072136
Chromosome Location	chr10:26502709-26502710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10508715	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014995	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014996	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11819063	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12243037	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2236417	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236418	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2839669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2839670	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2839671	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758446	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61839365	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7071922	0.84[ASN][1000 genomes]
rs8190582	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190598	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8190647	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs994502	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26501000-26503000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:26501000-26503800	Weak transcription	Gastric	stomach
3	chr10:26501200-26502800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr10:26501400-26503000	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:26501400-26503200	Flanking Active TSS	Brain Germinal Matrix	brain
6	chr10:26501600-26502800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr10:26501800-26503000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr10:26502000-26503000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
9	chr10:26502000-26504200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:26502200-26503000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
11	chr10:26502600-26502800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr10:26502600-26503000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr10:26502600-26503400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:26502600-26505000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr10:26502600-26505200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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