Variant report

Variant	rs11014995
Chromosome Location	chr10:26490556-26490557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10508715	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014996	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11819063	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12243037	0.83[EUR][1000 genomes]
rs2236417	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2236418	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2839669	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2839670	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2839671	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758446	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61839365	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071922	0.80[ASN][1000 genomes]
rs7072136	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8190582	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8190598	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190647	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs994502	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv819180	chr10:26489885-26491301	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26474000-26491000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26484800-26493400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:26486600-26493800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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