Variant report

Variant	rs12243037
Chromosome Location	chr10:26524374-26524375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26480268..26482287-chr10:26522868..26525834,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508715	0.91[ASW][hapmap];0.94[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014995	0.83[EUR][1000 genomes]
rs11014996	0.94[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap];0.87[YRI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11015014	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015015	0.82[AMR][1000 genomes]
rs11015024	0.81[AMR][1000 genomes]
rs11594057	0.81[GIH][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes]
rs11819063	0.94[EUR][1000 genomes]
rs1330572	0.94[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.85[TSI][hapmap]
rs1330582	0.81[AMR][1000 genomes]
rs2236417	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2236418	0.94[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.85[TSI][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2839669	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2839670	0.88[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.85[TSI][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2839671	0.94[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3758446	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781108	0.81[GIH][hapmap];0.89[TSI][hapmap]
rs3781113	0.89[TSI][hapmap]
rs4144102	0.81[MEX][hapmap];0.89[TSI][hapmap]
rs4749100	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4749103	0.85[AMR][1000 genomes]
rs4749108	0.81[GIH][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs55878324	0.80[AMR][1000 genomes]
rs61839365	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6482538	0.80[YRI][hapmap]
rs7072136	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7074897	0.82[AMR][1000 genomes]
rs7076544	0.85[CHB][hapmap]
rs8190582	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8190598	0.92[CEU][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8190647	0.94[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8190706	0.80[CEU][hapmap];0.81[AMR][1000 genomes]
rs8190754	0.81[GIH][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs994502	0.94[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26523600-26528600	Strong transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26523800-26525800	Weak transcription	Brain Germinal Matrix	brain

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