Variant report

Variant	rs55878324
Chromosome Location	chr10:26577671-26577672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10828968	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828969	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11015014	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015015	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015024	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015026	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015028	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594057	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11594128	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12243037	0.80[AMR][1000 genomes]
rs12247267	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12248143	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12250822	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12414701	0.81[ASN][1000 genomes]
rs12572822	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1330582	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1335547	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1831432	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1888251	0.80[ASN][1000 genomes]
rs1935996	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1999241	0.82[ASN][1000 genomes]
rs2017306	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2368159	0.80[ASN][1000 genomes]
rs2368160	0.80[ASN][1000 genomes]
rs3781106	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781108	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781109	0.83[ASN][1000 genomes]
rs3781111	0.82[ASN][1000 genomes]
rs3781112	0.83[ASN][1000 genomes]
rs3781113	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781114	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824694	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847379	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847380	0.85[ASN][1000 genomes]
rs4144102	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747547	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747548	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747549	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747550	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747552	0.84[ASN][1000 genomes]
rs4747553	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4749100	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4749101	0.82[ASN][1000 genomes]
rs4749102	0.82[ASN][1000 genomes]
rs4749103	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749105	0.82[ASN][1000 genomes]
rs4749107	0.83[ASN][1000 genomes]
rs4749108	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749109	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749110	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4749111	0.89[ASN][1000 genomes]
rs56086837	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56405990	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57685594	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838363	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61839388	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482548	0.82[ASN][1000 genomes]
rs6482550	0.82[ASN][1000 genomes]
rs6482555	0.83[ASN][1000 genomes]
rs7067571	0.82[ASN][1000 genomes]
rs7073119	0.82[ASN][1000 genomes]
rs7074235	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7074897	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7076544	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7080128	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7089218	0.81[ASN][1000 genomes]
rs7095327	0.82[ASN][1000 genomes]
rs7893400	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900739	0.80[ASN][1000 genomes]
rs7900976	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7902107	0.85[ASN][1000 genomes]
rs7906725	0.82[ASN][1000 genomes]
rs7909127	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7913676	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918935	0.81[ASN][1000 genomes]
rs8190647	0.80[AMR][1000 genomes]
rs8190683	0.80[ASN][1000 genomes]
rs8190706	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8190748	0.83[ASN][1000 genomes]
rs8190754	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8190756	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8190757	0.82[ASN][1000 genomes]
rs8190764	0.85[ASN][1000 genomes]
rs8190780	0.85[ASN][1000 genomes]
rs8190782	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190809	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs882138	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs913962	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs913963	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs913964	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913965	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992990	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26564000-26581800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26566400-26579600	Weak transcription	Brain Germinal Matrix	brain
3	chr10:26576600-26578000	Strong transcription	Pancreatic Islets	Pancreatic Islet

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