Variant report

Variant	rs8190647
Chromosome Location	chr10:26520513-26520514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10508715	0.85[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014993	0.88[CHB][hapmap]
rs11014995	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014996	0.85[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015014	0.90[AMR][1000 genomes]
rs11015015	0.82[AMR][1000 genomes]
rs11015024	0.81[AMR][1000 genomes]
rs11594057	0.80[AMR][1000 genomes]
rs11819063	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12243037	0.94[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1330572	0.85[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs1330581	0.91[JPT][hapmap]
rs1330582	0.81[AMR][1000 genomes]
rs2236417	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2236418	0.85[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2839669	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2839670	0.94[CHB][hapmap];0.81[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2839671	0.85[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758446	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3847378	0.84[ASN][1000 genomes]
rs4749100	0.92[AMR][1000 genomes]
rs4749101	0.82[JPT][hapmap]
rs4749103	0.85[AMR][1000 genomes]
rs55878324	0.80[AMR][1000 genomes]
rs61839365	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7072136	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073982	0.83[JPT][hapmap]
rs7074897	0.82[AMR][1000 genomes]
rs8190582	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190598	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8190706	0.81[AMR][1000 genomes]
rs8190764	0.82[JPT][hapmap]
rs994502	0.85[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26517600-26521800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
3	chr10:26519600-26523600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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