Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12414701	0.81[EUR][1000 genomes]
rs1330581	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1999241	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2368159	0.82[EUR][1000 genomes]
rs2368160	0.82[EUR][1000 genomes]
rs3781109	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3781111	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3781112	0.82[EUR][1000 genomes]
rs3847380	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4749101	0.81[EUR][1000 genomes]
rs4749102	0.81[EUR][1000 genomes]
rs4749105	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4749107	0.81[EUR][1000 genomes]
rs61839365	0.80[ASN][1000 genomes]
rs6482548	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482550	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7067571	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7071922	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073119	0.82[EUR][1000 genomes]
rs7089218	0.81[EUR][1000 genomes]
rs7091779	0.81[EUR][1000 genomes]
rs7095327	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7900739	0.82[EUR][1000 genomes]
rs7902107	0.80[EUR][1000 genomes]
rs7906725	0.82[EUR][1000 genomes]
rs7918935	0.81[EUR][1000 genomes]
rs8190647	0.84[ASN][1000 genomes]
rs8190678	0.81[EUR][1000 genomes]
rs8190683	0.81[EUR][1000 genomes]
rs8190748	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8190757	0.81[AMR][1000 genomes]
rs8190764	0.80[EUR][1000 genomes]
rs8190780	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs992990	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26517600-26521800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
3	chr10:26519600-26523600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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