Variant report

Variant	rs7900739
Chromosome Location	chr10:26543858-26543859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26535794..26538522-chr10:26542652..26545568,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs11015014	0.83[ASN][1000 genomes]
rs11015015	0.84[ASN][1000 genomes]
rs11015024	0.82[ASN][1000 genomes]
rs11015026	0.81[ASN][1000 genomes]
rs11015028	0.80[ASN][1000 genomes]
rs11594057	0.81[ASN][1000 genomes]
rs11594128	0.81[ASN][1000 genomes]
rs12241667	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12245460	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12265385	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12414701	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1330581	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1330582	0.82[ASN][1000 genomes]
rs1888251	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1935996	0.83[ASN][1000 genomes]
rs1999241	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2150158	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2368159	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781108	0.80[ASN][1000 genomes]
rs3781109	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3781111	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781112	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3781113	0.81[ASN][1000 genomes]
rs3781114	0.82[ASN][1000 genomes]
rs3824694	0.80[ASN][1000 genomes]
rs3847378	0.82[EUR][1000 genomes]
rs3847379	0.80[ASN][1000 genomes]
rs3847380	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4747547	0.82[ASN][1000 genomes]
rs4747549	0.80[ASN][1000 genomes]
rs4747550	0.80[ASN][1000 genomes]
rs4749100	0.83[ASN][1000 genomes]
rs4749101	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749102	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749103	0.82[ASN][1000 genomes]
rs4749105	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749107	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749108	0.81[ASN][1000 genomes]
rs4749109	0.80[ASN][1000 genomes]
rs4749112	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4749113	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55878324	0.80[ASN][1000 genomes]
rs56086837	0.80[ASN][1000 genomes]
rs56405990	0.82[ASN][1000 genomes]
rs57685594	0.80[ASN][1000 genomes]
rs61839388	0.80[ASN][1000 genomes]
rs6482548	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6482550	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7067571	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068091	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071922	0.81[EUR][1000 genomes]
rs7073119	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7074235	0.82[ASN][1000 genomes]
rs7074897	0.81[ASN][1000 genomes]
rs7076544	0.82[ASN][1000 genomes]
rs7079553	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7079848	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7080952	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7089218	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7091779	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7095327	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893400	0.82[ASN][1000 genomes]
rs7900976	0.82[ASN][1000 genomes]
rs7902107	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7906725	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7909127	0.82[ASN][1000 genomes]
rs7913676	0.80[ASN][1000 genomes]
rs7918935	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8190678	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8190683	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190704	0.84[ASN][1000 genomes]
rs8190706	0.82[ASN][1000 genomes]
rs8190748	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8190754	0.81[ASN][1000 genomes]
rs8190756	0.81[ASN][1000 genomes]
rs8190757	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190764	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190780	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190782	0.80[ASN][1000 genomes]
rs882139	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs913962	0.82[ASN][1000 genomes]
rs913963	0.82[ASN][1000 genomes]
rs913964	0.80[ASN][1000 genomes]
rs913965	0.80[ASN][1000 genomes]
rs992990	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26531800-26554800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26543400-26544000	Weak transcription	Spleen	Spleen
4	chr10:26543400-26544800	Enhancers	Brain Germinal Matrix	brain
5	chr10:26543800-26544200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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