Variant report

Variant	rs8190704
Chromosome Location	chr10:26557313-26557314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12414701	0.85[ASN][1000 genomes]
rs1888251	0.80[ASN][1000 genomes]
rs1999241	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2368159	0.84[ASN][1000 genomes]
rs2368160	0.84[ASN][1000 genomes]
rs3781109	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3781111	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781112	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3847380	0.83[ASN][1000 genomes]
rs4749101	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749102	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749105	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749107	0.83[ASN][1000 genomes]
rs6482548	0.85[ASN][1000 genomes]
rs6482550	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7067571	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7073119	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7089218	0.85[ASN][1000 genomes]
rs7091779	0.84[ASN][1000 genomes]
rs7095327	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7900739	0.84[ASN][1000 genomes]
rs7902107	0.83[ASN][1000 genomes]
rs7906725	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7918935	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8190678	0.82[ASN][1000 genomes]
rs8190683	0.84[ASN][1000 genomes]
rs8190748	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8190757	0.82[ASN][1000 genomes]
rs8190764	0.83[ASN][1000 genomes]
rs8190780	0.83[ASN][1000 genomes]
rs992990	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26554400-26562200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26555400-26557600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:26556800-26557800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:26556800-26558800	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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