Variant report

Variant	rs913962
Chromosome Location	chr10:26566235-26566236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10828968	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10828969	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015014	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015026	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015028	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11594057	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11594128	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12247267	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12248143	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12250822	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12414701	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12572822	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1330581	0.82[CHB][hapmap]
rs1330582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335547	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1831432	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1935996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1999241	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2017306	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2368159	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2368160	0.82[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs3781106	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3781109	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs3781111	0.81[ASN][1000 genomes]
rs3781112	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs3781113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3781114	0.93[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847379	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847380	0.83[ASN][1000 genomes]
rs4144102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4747547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747548	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4747549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747552	0.82[ASN][1000 genomes]
rs4747553	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749100	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4749101	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4749102	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4749103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749105	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4749107	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4749108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749109	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749110	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749111	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55878324	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56086837	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56405990	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57685594	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61838363	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61839388	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6482548	0.84[ASN][1000 genomes]
rs6482550	0.84[ASN][1000 genomes]
rs6482555	0.81[ASN][1000 genomes]
rs7067571	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7073119	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7074235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074897	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7076544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080128	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7089218	0.83[ASN][1000 genomes]
rs7091779	0.81[ASN][1000 genomes]
rs7095327	0.84[ASN][1000 genomes]
rs7893400	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900739	0.82[ASN][1000 genomes]
rs7900976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902107	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7906725	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7909127	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913676	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918935	0.83[ASN][1000 genomes]
rs8190683	0.82[ASN][1000 genomes]
rs8190706	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190748	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs8190754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8190756	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8190757	0.81[ASN][1000 genomes]
rs8190764	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs8190780	0.83[ASN][1000 genomes]
rs8190782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8190809	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs882138	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs913963	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913964	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs913965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs989118	0.81[EUR][1000 genomes]
rs992990	0.91[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26559000-26576600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26564000-26569200	Weak transcription	Fetal Brain Male	brain
3	chr10:26564000-26581800	Weak transcription	Brain Anterior Caudate	brain
4	chr10:26564200-26566400	Strong transcription	Brain Germinal Matrix	brain
5	chr10:26565600-26566600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:26565600-26568400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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