Variant report

Variant	rs61838363
Chromosome Location	chr10:26607965-26607966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26605620..26608060-chr10:26623312..26625310,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10828968	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828969	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015014	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11015015	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11015024	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11015026	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015028	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11594057	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11594128	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11812647	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11816486	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11816523	0.82[AMR][1000 genomes]
rs12241667	0.83[ASN][1000 genomes]
rs12247267	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248143	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12250822	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12265385	0.83[ASN][1000 genomes]
rs12572822	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330582	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1335547	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1831432	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1888251	0.83[ASN][1000 genomes]
rs1935996	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2017306	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2150158	0.83[ASN][1000 genomes]
rs3781106	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3781108	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3781113	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3781114	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3824694	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3847379	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4144102	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4747547	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4747548	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4747549	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4747550	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4747552	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747553	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749100	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4749103	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749108	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749109	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749110	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749111	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749113	0.84[ASN][1000 genomes]
rs55878324	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56086837	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56405990	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57685594	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61839388	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6482555	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7068091	0.84[ASN][1000 genomes]
rs7074235	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7074897	0.87[EUR][1000 genomes]
rs7076544	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7079553	0.84[ASN][1000 genomes]
rs7079848	0.84[ASN][1000 genomes]
rs7080128	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7080952	0.84[ASN][1000 genomes]
rs7893400	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7900976	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7909127	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7913676	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8190706	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8190754	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8190756	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8190782	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8190809	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs882138	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs882139	0.82[ASN][1000 genomes]
rs913962	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs913963	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs913964	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs913965	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs989118	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26607000-26608200	Weak transcription	Pancreas	Pancrea

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