Variant report

Variant	rs6482538
Chromosome Location	chr10:26509864-26509865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10508715	0.80[YRI][hapmap]
rs11014982	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11014996	0.93[YRI][hapmap]
rs11015012	0.83[CEU][hapmap]
rs12098763	0.83[CEU][hapmap]
rs12243037	0.80[YRI][hapmap]
rs12243085	1.00[CEU][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12263667	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12267286	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1805398	0.83[CEU][hapmap]
rs2298124	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2839668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2839674	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2839676	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33947968	0.85[EUR][1000 genomes]
rs3781116	1.00[CEU][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781118	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3904297	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3904298	0.80[EUR][1000 genomes]
rs4121076	1.00[EUR][1000 genomes]
rs41304609	1.00[EUR][1000 genomes]
rs56296397	0.88[EUR][1000 genomes]
rs56981377	0.86[EUR][1000 genomes]
rs59122563	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59914979	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482539	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482540	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7067786	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7080693	0.89[AFR][1000 genomes]
rs73594327	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7897510	0.83[CEU][hapmap]
rs7908975	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190597	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190598	0.86[YRI][hapmap]
rs8190607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190635	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190639	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190641	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190646	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190649	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs8190650	0.83[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26505200-26510800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
2	chr10:26505600-26510000	Bivalent/Poised TSS	Fetal Brain Female	brain
3	chr10:26508200-26510400	Active TSS	Brain Germinal Matrix	brain
4	chr10:26509800-26510400	Enhancers	Pancreatic Islets	Pancreatic Islet

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