Variant report

Variant	rs56981377
Chromosome Location	chr10:26447794-26447795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11014982	0.98[EUR][1000 genomes]
rs1934449	0.85[EUR][1000 genomes]
rs2298124	0.86[EUR][1000 genomes]
rs2839668	0.86[EUR][1000 genomes]
rs2839674	0.84[EUR][1000 genomes]
rs2839676	0.84[EUR][1000 genomes]
rs33947968	0.95[EUR][1000 genomes]
rs34067308	0.84[EUR][1000 genomes]
rs35010955	0.84[EUR][1000 genomes]
rs3781116	0.84[EUR][1000 genomes]
rs3781118	0.86[EUR][1000 genomes]
rs4121076	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41304609	0.86[EUR][1000 genomes]
rs41314633	0.84[EUR][1000 genomes]
rs56210104	0.84[EUR][1000 genomes]
rs56296397	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59122563	0.81[EUR][1000 genomes]
rs6482538	0.86[EUR][1000 genomes]
rs6482539	0.86[EUR][1000 genomes]
rs7067786	0.84[EUR][1000 genomes]
rs73594327	0.84[EUR][1000 genomes]
rs7908975	0.86[EUR][1000 genomes]
rs8190597	0.86[EUR][1000 genomes]
rs8190607	0.86[EUR][1000 genomes]
rs8190635	0.84[EUR][1000 genomes]
rs8190639	0.81[EUR][1000 genomes]
rs8190641	0.81[EUR][1000 genomes]
rs8190646	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26438000-26451000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26446800-26450800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:26447000-26448800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:26447000-26453400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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