Variant report

Variant	rs33947968
Chromosome Location	chr10:26434455-26434456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11014982	0.97[EUR][1000 genomes]
rs1934449	0.87[EUR][1000 genomes]
rs2298124	0.85[EUR][1000 genomes]
rs2839668	0.85[EUR][1000 genomes]
rs2839674	0.82[EUR][1000 genomes]
rs2839676	0.82[EUR][1000 genomes]
rs34067308	0.88[EUR][1000 genomes]
rs35010955	0.88[EUR][1000 genomes]
rs3781116	0.82[EUR][1000 genomes]
rs3781118	0.85[EUR][1000 genomes]
rs4121076	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41304609	0.85[EUR][1000 genomes]
rs41314633	0.88[EUR][1000 genomes]
rs56210104	0.88[EUR][1000 genomes]
rs56296397	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56981377	0.95[EUR][1000 genomes]
rs6482538	0.85[EUR][1000 genomes]
rs6482539	0.85[EUR][1000 genomes]
rs7067786	0.82[EUR][1000 genomes]
rs73594327	0.82[EUR][1000 genomes]
rs7908975	0.85[EUR][1000 genomes]
rs8190597	0.85[EUR][1000 genomes]
rs8190607	0.85[EUR][1000 genomes]
rs8190635	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26402000-26436200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26428000-26436400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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