Variant report

Variant	rs3781116
Chromosome Location	chr10:26516517-26516518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11014982	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11015002	0.81[MKK][hapmap]
rs11015012	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs11818977	1.00[GIH][hapmap]
rs11819181	1.00[GIH][hapmap]
rs12098763	0.86[CEU][hapmap];0.83[GIH][hapmap]
rs12243085	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738949	1.00[GIH][hapmap]
rs1805398	0.86[CEU][hapmap];0.83[GIH][hapmap];0.87[TSI][hapmap]
rs2298124	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2839668	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2839674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2839676	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33947968	0.82[EUR][1000 genomes]
rs3781118	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3904297	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3904298	0.81[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4121076	0.97[EUR][1000 genomes]
rs41304609	0.97[EUR][1000 genomes]
rs41454449	1.00[GIH][hapmap]
rs56296397	0.85[EUR][1000 genomes]
rs56981377	0.84[EUR][1000 genomes]
rs59122563	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59914979	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6482538	1.00[CEU][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482539	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482540	0.86[CEU][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7067786	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072137	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs7080693	0.93[AFR][1000 genomes]
rs73594327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897510	0.86[CEU][hapmap];0.83[GIH][hapmap];0.87[TSI][hapmap]
rs7908975	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190597	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190607	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190635	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190639	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190641	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190649	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs8190650	0.86[CEU][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs8190718	0.83[GIH][hapmap];0.87[TSI][hapmap]
rs8190770	0.83[GIH][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26514600-26518400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26515800-26518800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26516400-26517600	Strong transcription	Brain Germinal Matrix	brain

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