Variant report

Variant	rs7072137
Chromosome Location	chr10:26556967-26556968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs11015012	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs12098763	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs12098764	0.87[EUR][1000 genomes]
rs12243085	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs12263667	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs12264198	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1556234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16926833	0.80[EUR][1000 genomes]
rs16926835	0.80[EUR][1000 genomes]
rs1805398	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs2003243	0.80[EUR][1000 genomes]
rs2003244	0.80[EUR][1000 genomes]
rs2003245	0.80[EUR][1000 genomes]
rs2150157	0.84[AMR][1000 genomes]
rs2150159	0.84[AMR][1000 genomes]
rs2150160	0.84[AMR][1000 genomes]
rs2839676	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs2839677	0.85[EUR][1000 genomes]
rs2887178	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3781105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3781110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3781116	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs3904297	0.80[EUR][1000 genomes]
rs3904298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs56067241	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56071816	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56271228	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56965874	0.81[AMR][1000 genomes]
rs58259479	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58499531	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59625980	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59914979	0.80[EUR][1000 genomes]
rs60153816	0.84[AMR][1000 genomes]
rs60237056	0.81[AMR][1000 genomes]
rs60376155	0.81[AMR][1000 genomes]
rs60405682	0.84[AMR][1000 genomes]
rs60579755	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61268980	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61292676	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61361088	0.81[AMR][1000 genomes]
rs61397455	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482540	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs6482547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482552	0.80[EUR][1000 genomes]
rs6482553	0.80[EUR][1000 genomes]
rs6482554	0.80[EUR][1000 genomes]
rs7076001	0.80[EUR][1000 genomes]
rs7100268	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs74126413	0.80[EUR][1000 genomes]
rs74126414	0.80[EUR][1000 genomes]
rs74126416	0.80[EUR][1000 genomes]
rs74126423	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126424	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126425	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126426	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126427	0.84[AMR][1000 genomes]
rs74126428	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126429	0.80[EUR][1000 genomes]
rs74126430	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126431	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126432	0.84[AMR][1000 genomes]
rs74126433	0.84[AMR][1000 genomes]
rs74126434	0.84[AMR][1000 genomes]
rs74126436	0.84[AMR][1000 genomes]
rs74126437	0.84[AMR][1000 genomes]
rs74126438	0.84[AMR][1000 genomes]
rs74126439	0.84[AMR][1000 genomes]
rs74126442	0.84[AMR][1000 genomes]
rs74126443	0.81[AMR][1000 genomes]
rs74126448	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126449	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126450	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126451	0.84[AMR][1000 genomes]
rs74126453	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74126454	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7894004	0.80[EUR][1000 genomes]
rs7897510	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs7899642	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7905138	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7907349	0.81[AMR][1000 genomes]
rs7907372	0.84[AMR][1000 genomes]
rs7908659	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7908975	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs7911425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7914428	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7915415	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7919421	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7921664	0.90[AMR][1000 genomes]
rs7922791	0.84[AMR][1000 genomes]
rs8190646	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs8190649	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs8190650	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs8190718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8190750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8190770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8190775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8190787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8190789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8190800	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs876845	0.80[EUR][1000 genomes]
rs876846	0.80[EUR][1000 genomes]
rs876847	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26554400-26562200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26555400-26557600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:26556800-26557800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:26556800-26558800	Enhancers	Brain Germinal Matrix	brain

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