Variant report

Variant	rs1556234
Chromosome Location	chr10:26559571-26559572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11015012	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12098763	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12098764	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12264198	0.80[EUR][1000 genomes]
rs16926833	0.80[EUR][1000 genomes]
rs16926835	0.80[EUR][1000 genomes]
rs1805398	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2003243	0.80[EUR][1000 genomes]
rs2003244	0.80[EUR][1000 genomes]
rs2003245	0.80[EUR][1000 genomes]
rs2298124	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2839668	0.95[AMR][1000 genomes]
rs2839677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2887178	0.80[EUR][1000 genomes]
rs3781105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781118	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs3904297	0.80[EUR][1000 genomes]
rs3904298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs4121076	0.85[AMR][1000 genomes]
rs41304609	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs56067241	0.80[EUR][1000 genomes]
rs56071816	0.80[EUR][1000 genomes]
rs56271228	0.80[EUR][1000 genomes]
rs56296397	0.85[AMR][1000 genomes]
rs58259479	0.80[EUR][1000 genomes]
rs58499531	0.80[EUR][1000 genomes]
rs59625980	0.80[EUR][1000 genomes]
rs59914979	0.80[EUR][1000 genomes]
rs60579755	0.80[EUR][1000 genomes]
rs61268980	0.80[EUR][1000 genomes]
rs61292676	0.80[EUR][1000 genomes]
rs61397455	0.80[EUR][1000 genomes]
rs6482540	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs6482547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482552	0.80[EUR][1000 genomes]
rs6482553	0.80[EUR][1000 genomes]
rs6482554	0.80[EUR][1000 genomes]
rs7072137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7076001	0.80[EUR][1000 genomes]
rs7100268	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126413	0.80[EUR][1000 genomes]
rs74126414	0.80[EUR][1000 genomes]
rs74126416	0.80[EUR][1000 genomes]
rs74126423	0.80[EUR][1000 genomes]
rs74126424	0.80[EUR][1000 genomes]
rs74126425	0.80[EUR][1000 genomes]
rs74126426	0.80[EUR][1000 genomes]
rs74126428	0.80[EUR][1000 genomes]
rs74126429	0.80[EUR][1000 genomes]
rs74126430	0.80[EUR][1000 genomes]
rs74126431	0.80[EUR][1000 genomes]
rs74126448	0.80[EUR][1000 genomes]
rs74126449	0.80[EUR][1000 genomes]
rs74126450	0.80[EUR][1000 genomes]
rs74126453	0.80[EUR][1000 genomes]
rs74126454	0.80[EUR][1000 genomes]
rs7894004	0.80[EUR][1000 genomes]
rs7897510	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7899642	0.80[EUR][1000 genomes]
rs7905138	0.80[EUR][1000 genomes]
rs7908659	0.80[EUR][1000 genomes]
rs7911425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914428	0.80[EUR][1000 genomes]
rs7915415	0.80[EUR][1000 genomes]
rs7919421	0.80[EUR][1000 genomes]
rs8190607	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8190649	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8190650	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8190718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190800	0.84[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs876845	0.80[EUR][1000 genomes]
rs876846	0.80[EUR][1000 genomes]
rs876847	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26554400-26562200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:26558000-26563200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:26558800-26559600	Genic enhancers	Brain Germinal Matrix	brain
4	chr10:26559000-26563400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:26559000-26563400	Weak transcription	Fetal Brain Female	brain
6	chr10:26559000-26576600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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