Variant report

Variant	rs56296397
Chromosome Location	chr10:26459602-26459603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11014982	1.00[EUR][1000 genomes]
rs1556234	0.85[AMR][1000 genomes]
rs1934449	0.84[EUR][1000 genomes]
rs2298124	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2839668	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2839674	0.85[EUR][1000 genomes]
rs2839676	0.85[EUR][1000 genomes]
rs2839677	0.85[AMR][1000 genomes]
rs33947968	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34067308	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35010955	0.85[EUR][1000 genomes]
rs3781105	0.85[AMR][1000 genomes]
rs3781110	0.85[AMR][1000 genomes]
rs3781116	0.85[EUR][1000 genomes]
rs3781118	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4121076	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41304609	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41314633	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56210104	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56981377	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59122563	0.82[EUR][1000 genomes]
rs6482538	0.88[EUR][1000 genomes]
rs6482539	0.88[EUR][1000 genomes]
rs7067786	0.85[EUR][1000 genomes]
rs73594327	0.85[EUR][1000 genomes]
rs7908975	0.88[EUR][1000 genomes]
rs8190597	0.88[EUR][1000 genomes]
rs8190607	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8190635	0.85[EUR][1000 genomes]
rs8190639	0.82[EUR][1000 genomes]
rs8190641	0.82[EUR][1000 genomes]
rs8190646	0.81[EUR][1000 genomes]
rs8190649	0.85[AMR][1000 genomes]
rs8190650	0.89[AMR][1000 genomes]
rs8190718	0.85[AMR][1000 genomes]
rs8190750	0.85[AMR][1000 genomes]
rs8190770	0.85[AMR][1000 genomes]
rs8190775	0.85[AMR][1000 genomes]
rs8190787	0.85[AMR][1000 genomes]
rs8190789	0.85[AMR][1000 genomes]
rs8190800	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26453800-26466800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26456600-26461600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:26456800-26461800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:26456800-26461800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:26458200-26460200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:26458400-26459800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:26458400-26461600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:26458600-26460600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:26459200-26460800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:26459200-26460800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:26459400-26466800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links