Variant report

Variant	rs8190800
Chromosome Location	chr10:26590316-26590317
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs11015012	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12098763	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12098764	0.81[EUR][1000 genomes]
rs12264198	0.83[EUR][1000 genomes]
rs1556234	0.84[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16926833	0.83[EUR][1000 genomes]
rs16926835	0.83[EUR][1000 genomes]
rs1805398	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2003243	0.83[EUR][1000 genomes]
rs2003244	0.83[EUR][1000 genomes]
rs2003245	0.83[EUR][1000 genomes]
rs2150157	0.81[EUR][1000 genomes]
rs2150159	0.81[EUR][1000 genomes]
rs2150160	0.81[EUR][1000 genomes]
rs2298124	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2839668	0.95[AMR][1000 genomes]
rs2839677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2887178	0.83[EUR][1000 genomes]
rs3781105	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781110	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781118	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs3904298	1.00[JPT][hapmap]
rs4121076	0.85[AMR][1000 genomes]
rs41304609	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs56067241	0.83[EUR][1000 genomes]
rs56071816	0.83[EUR][1000 genomes]
rs56271228	0.83[EUR][1000 genomes]
rs56296397	0.85[AMR][1000 genomes]
rs56965874	0.81[EUR][1000 genomes]
rs58259479	0.83[EUR][1000 genomes]
rs58499531	0.83[EUR][1000 genomes]
rs59625980	0.83[EUR][1000 genomes]
rs60237056	0.80[EUR][1000 genomes]
rs60376155	0.80[EUR][1000 genomes]
rs60405682	0.81[EUR][1000 genomes]
rs60579755	0.83[EUR][1000 genomes]
rs61268980	0.83[EUR][1000 genomes]
rs61292676	0.83[EUR][1000 genomes]
rs61361088	0.80[EUR][1000 genomes]
rs61397455	0.83[EUR][1000 genomes]
rs6482540	1.00[JPT][hapmap]
rs6482547	0.82[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482552	0.83[EUR][1000 genomes]
rs6482553	0.83[EUR][1000 genomes]
rs6482554	0.83[EUR][1000 genomes]
rs7072137	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7076001	0.83[EUR][1000 genomes]
rs7100268	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs74126413	0.83[EUR][1000 genomes]
rs74126414	0.83[EUR][1000 genomes]
rs74126416	0.83[EUR][1000 genomes]
rs74126417	0.81[EUR][1000 genomes]
rs74126418	0.81[EUR][1000 genomes]
rs74126419	0.81[EUR][1000 genomes]
rs74126420	0.81[EUR][1000 genomes]
rs74126423	0.83[EUR][1000 genomes]
rs74126424	0.83[EUR][1000 genomes]
rs74126425	0.83[EUR][1000 genomes]
rs74126426	0.83[EUR][1000 genomes]
rs74126427	0.80[EUR][1000 genomes]
rs74126428	0.83[EUR][1000 genomes]
rs74126429	0.83[EUR][1000 genomes]
rs74126430	0.83[EUR][1000 genomes]
rs74126431	0.83[EUR][1000 genomes]
rs74126432	0.81[EUR][1000 genomes]
rs74126433	0.81[EUR][1000 genomes]
rs74126434	0.81[EUR][1000 genomes]
rs74126437	0.81[EUR][1000 genomes]
rs74126438	0.81[EUR][1000 genomes]
rs74126439	0.81[EUR][1000 genomes]
rs74126442	0.81[EUR][1000 genomes]
rs74126448	0.83[EUR][1000 genomes]
rs74126449	0.83[EUR][1000 genomes]
rs74126450	0.83[EUR][1000 genomes]
rs74126451	0.80[EUR][1000 genomes]
rs74126453	0.83[EUR][1000 genomes]
rs74126454	0.83[EUR][1000 genomes]
rs7894004	0.83[EUR][1000 genomes]
rs7897510	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7899642	0.83[EUR][1000 genomes]
rs7905138	0.83[EUR][1000 genomes]
rs7907349	0.81[EUR][1000 genomes]
rs7907372	0.81[EUR][1000 genomes]
rs7908659	0.83[EUR][1000 genomes]
rs7911425	0.84[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914428	0.83[EUR][1000 genomes]
rs7915415	0.83[EUR][1000 genomes]
rs7919421	0.83[EUR][1000 genomes]
rs7921664	0.81[EUR][1000 genomes]
rs7922791	0.81[EUR][1000 genomes]
rs8190607	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8190649	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes]
rs8190650	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8190718	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190750	0.84[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190770	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190775	0.84[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190787	0.84[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190789	0.84[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876845	0.83[EUR][1000 genomes]
rs876846	0.83[EUR][1000 genomes]
rs876847	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26583600-26591000	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26586800-26594600	Weak transcription	Fetal Brain Female	brain
3	chr10:26587400-26599000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:26587800-26590600	Weak transcription	Brain Germinal Matrix	brain

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