Variant report

Variant	rs4121076
Chromosome Location	chr10:26475341-26475342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11014982	0.88[EUR][1000 genomes]
rs12243085	0.91[EUR][1000 genomes]
rs12263667	0.91[EUR][1000 genomes]
rs12267286	0.91[EUR][1000 genomes]
rs1556234	0.85[AMR][1000 genomes]
rs2298124	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2839668	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2839674	0.97[EUR][1000 genomes]
rs2839676	0.97[EUR][1000 genomes]
rs2839677	0.85[AMR][1000 genomes]
rs33947968	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34067308	0.84[AMR][1000 genomes]
rs3781105	0.85[AMR][1000 genomes]
rs3781110	0.85[AMR][1000 genomes]
rs3781116	0.97[EUR][1000 genomes]
rs3781118	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3904297	0.80[EUR][1000 genomes]
rs3904298	0.80[EUR][1000 genomes]
rs41304609	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41314633	0.84[AMR][1000 genomes]
rs56210104	0.84[AMR][1000 genomes]
rs56296397	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56981377	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59122563	0.94[EUR][1000 genomes]
rs59914979	0.80[EUR][1000 genomes]
rs6482538	1.00[EUR][1000 genomes]
rs6482539	1.00[EUR][1000 genomes]
rs6482540	0.80[EUR][1000 genomes]
rs7067786	0.97[EUR][1000 genomes]
rs73594327	0.97[EUR][1000 genomes]
rs7908975	1.00[EUR][1000 genomes]
rs8190597	1.00[EUR][1000 genomes]
rs8190607	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8190635	0.97[EUR][1000 genomes]
rs8190639	0.94[EUR][1000 genomes]
rs8190641	0.94[EUR][1000 genomes]
rs8190646	0.92[EUR][1000 genomes]
rs8190649	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8190650	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8190718	0.85[AMR][1000 genomes]
rs8190750	0.85[AMR][1000 genomes]
rs8190770	0.85[AMR][1000 genomes]
rs8190775	0.85[AMR][1000 genomes]
rs8190787	0.85[AMR][1000 genomes]
rs8190789	0.85[AMR][1000 genomes]
rs8190800	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26464600-26478000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26474000-26491000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links