Variant report

Variant	rs3904297
Chromosome Location	chr10:26527073-26527074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11015012	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12098763	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12098764	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12243085	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12263667	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12267286	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1556234	0.80[EUR][1000 genomes]
rs1805398	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2298124	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2839668	0.80[EUR][1000 genomes]
rs2839674	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2839676	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2839677	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781116	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781118	0.80[EUR][1000 genomes]
rs3904298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121076	0.80[EUR][1000 genomes]
rs41304609	0.80[EUR][1000 genomes]
rs59122563	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59914979	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482538	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482539	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482540	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482547	0.80[EUR][1000 genomes]
rs7067786	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7072137	0.80[EUR][1000 genomes]
rs73594327	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7897510	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7908975	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7911425	0.80[EUR][1000 genomes]
rs8190597	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8190607	0.80[EUR][1000 genomes]
rs8190635	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8190639	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8190641	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8190646	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8190649	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8190650	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190718	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26523600-26528600	Strong transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26525800-26527200	Strong transcription	Brain Germinal Matrix	brain

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