Variant report

Variant	rs8190597
Chromosome Location	chr10:26507030-26507031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:26506260-26507844	H1-neurons	neurons:	n/a	chr10:26506967-26506980 chr10:26507108-26507121
2	TAF1	chr10:26505964-26507757	H1-neurons	neurons:	n/a	n/a
3	SIN3A	chr10:26506310-26507471	H1-hESC	embryonic stem cell:	n/a	n/a
4	E2F6	chr10:26506430-26507410	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr10:26506968-26507441	H1-hESC	embryonic stem cell:	n/a	n/a
6	TAF1	chr10:26503915-26507739	H1-neurons	neurons:	n/a	n/a
7	CTBP2	chr10:26503474-26507402	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr10:26506650-26507640	H1-hESC	embryonic stem cell:	n/a	chr10:26506967-26506977
9	POLR2A	chr10:26502119-26508104	H1-neurons	neurons:	n/a	n/a
10	POLR2A	chr10:26503373-26508237	H1-neurons	neurons:	n/a	n/a
11	SUZ12	chr10:26503603-26508046	NT2-D1	testis:	n/a	n/a
12	SUZ12	chr10:26504611-26507634	H1-hESC	embryonic stem cell:	n/a	n/a
13	REST	chr10:26501382-26511273	H1-neurons	neurons:	n/a	chr10:26506086-26506100 chr10:26505231-26505240 chr10:26505220-26505240 chr10:26503893-26503900 chr10:26505220-26505240 chr10:26506967-26506980 chr10:26508383-26508401 chr10:26505195-26505208 chr10:26505220-26505234 chr10:26507108-26507121 chr10:26505222-26505232 chr10:26505227-26505240 chr10:26505224-26505237 chr10:26505220-26505240 chr10:26505221-26505239 chr10:26505224-26505237 chr10:26502538-26502551
14	E2F6	chr10:26506274-26507482	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
GAD2	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11014982	0.88[EUR][1000 genomes]
rs12243085	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12263667	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12267286	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2298124	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2839668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2839674	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2839676	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33947968	0.85[EUR][1000 genomes]
rs3781116	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781118	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3904297	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3904298	0.80[EUR][1000 genomes]
rs4121076	1.00[EUR][1000 genomes]
rs41304609	1.00[EUR][1000 genomes]
rs56296397	0.88[EUR][1000 genomes]
rs56981377	0.86[EUR][1000 genomes]
rs59122563	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59914979	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482538	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482539	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482540	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7067786	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7080693	0.92[AFR][1000 genomes]
rs73594327	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7908975	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190635	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190639	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190641	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190646	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190649	0.80[EUR][1000 genomes]
rs8190650	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26502800-26508600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr10:26503000-26507800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr10:26503600-26507400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr10:26503600-26507600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr10:26503600-26507600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr10:26503800-26507200	Bivalent Enhancer	Liver	Liver
7	chr10:26503800-26507200	Bivalent Enhancer	Fetal Brain Male	brain
8	chr10:26503800-26507600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
9	chr10:26504000-26507200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:26504400-26507400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
11	chr10:26504600-26507400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
12	chr10:26504600-26507400	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr10:26504600-26507400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
14	chr10:26505000-26507400	Bivalent Enhancer	Primary B cells from cord blood	blood
15	chr10:26505000-26507400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr10:26505000-26507400	Bivalent Enhancer	Fetal Stomach	stomach
17	chr10:26505200-26510800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
18	chr10:26505400-26507200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:26505400-26507800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
20	chr10:26505400-26507800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
21	chr10:26505400-26508200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
22	chr10:26505600-26507200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:26505600-26507400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr10:26505600-26510000	Bivalent/Poised TSS	Fetal Brain Female	brain
25	chr10:26505800-26507400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
26	chr10:26505800-26507400	Bivalent Enhancer	Adipose Nuclei	Adipose
27	chr10:26506200-26507200	Bivalent Enhancer	Esophagus	oesophagus
28	chr10:26506200-26507400	Bivalent Enhancer	Lung	lung
29	chr10:26506200-26507800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr10:26506400-26507200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:26506400-26507200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:26506400-26507400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:26506400-26507400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:26506400-26507400	Bivalent Enhancer	Fetal Intestine Small	intestine
35	chr10:26506400-26507600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:26506400-26507600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr10:26506600-26507200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:26506600-26507200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
39	chr10:26506600-26507200	Bivalent Enhancer	Spleen	Spleen
40	chr10:26506600-26507200	Bivalent Enhancer	NH-A	brain
41	chr10:26506600-26507400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:26506600-26507400	Bivalent Enhancer	Left Ventricle	heart
43	chr10:26506600-26507400	Bivalent/Poised TSS	Psoas Muscle	Psoas
44	chr10:26506600-26507600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:26506600-26507600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:26506600-26507600	Bivalent Enhancer	Fetal Heart	heart
47	chr10:26506800-26507200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:26506800-26507200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:26506800-26507200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:26506800-26507200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links