Variant report

Variant	rs6482539
Chromosome Location	chr10:26510719-26510720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11014982	0.88[EUR][1000 genomes]
rs12243085	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12263667	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12267286	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2298124	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2839668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2839674	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2839676	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33947968	0.85[EUR][1000 genomes]
rs3781116	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781118	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3904297	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3904298	0.80[EUR][1000 genomes]
rs4121076	1.00[EUR][1000 genomes]
rs41304609	1.00[EUR][1000 genomes]
rs56296397	0.88[EUR][1000 genomes]
rs56981377	0.86[EUR][1000 genomes]
rs59122563	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59914979	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482538	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482540	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7067786	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7080693	0.87[AFR][1000 genomes]
rs73594327	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7908975	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190597	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190635	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190639	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190641	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190646	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8190649	0.80[EUR][1000 genomes]
rs8190650	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26505200-26510800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
2	chr10:26510400-26510800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr10:26510400-26511000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr10:26510400-26511600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:26510600-26510800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:26510600-26510800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr10:26510600-26510800	Active TSS	Brain Germinal Matrix	brain
8	chr10:26510600-26511000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr10:26510600-26511000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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