Variant report

Variant	rs41314633
Chromosome Location	chr10:26310209-26310210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10828902	0.91[EUR][1000 genomes]
rs11014982	0.85[EUR][1000 genomes]
rs1934449	0.98[EUR][1000 genomes]
rs33947968	0.88[EUR][1000 genomes]
rs34067308	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35010955	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4121076	0.84[AMR][1000 genomes]
rs41314631	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56077277	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56210104	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56296397	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56981377	0.84[EUR][1000 genomes]
rs58373777	0.91[EUR][1000 genomes]
rs73610362	0.91[EUR][1000 genomes]
rs73610363	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26304000-26313200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26306000-26313600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:26306000-26314200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:26306200-26314600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:26310200-26313800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links