Variant report

Variant	rs10828902
Chromosome Location	chr10:26190258-26190259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10128512	0.83[YRI][hapmap]
rs11014816	0.81[EUR][1000 genomes]
rs11014818	0.81[EUR][1000 genomes]
rs12249093	0.83[YRI][hapmap]
rs12254587	0.82[YRI][hapmap]
rs1934449	0.89[EUR][1000 genomes]
rs34067308	0.91[EUR][1000 genomes]
rs35010955	0.91[EUR][1000 genomes]
rs41314633	0.91[EUR][1000 genomes]
rs56210104	0.91[EUR][1000 genomes]
rs58373777	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73610362	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73610363	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905635	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26188600-26190400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:26188600-26197000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:26189000-26190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:26189000-26193200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:26189600-26190400	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:26189600-26193800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:26189800-26192000	Enhancers	GM12878-XiMat	blood
8	chr10:26190000-26191000	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr10:26190000-26191200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links