Variant report

Variant	rs12249093
Chromosome Location	chr10:26228994-26228995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10128266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128512	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10828903	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10828918	0.81[YRI][hapmap]
rs10828930	0.83[YRI][hapmap]
rs11014826	1.00[AMR][1000 genomes]
rs11014835	1.00[AMR][1000 genomes]
rs11014836	1.00[AMR][1000 genomes]
rs11014838	1.00[AMR][1000 genomes]
rs11014843	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014844	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014849	0.85[AFR][1000 genomes]
rs11014858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014915	0.83[YRI][hapmap]
rs11014926	0.87[YRI][hapmap]
rs11814511	0.83[YRI][hapmap]
rs12251038	1.00[AMR][1000 genomes]
rs12252281	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254587	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12255497	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58289791	1.00[AMR][1000 genomes]
rs7073840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086945	1.00[AMR][1000 genomes]
rs7086963	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7087106	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089023	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093036	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098026	0.80[YRI][hapmap]
rs7099128	1.00[AMR][1000 genomes]
rs7099929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73610364	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73610365	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7896360	0.83[YRI][hapmap]
rs7904403	1.00[AMR][1000 genomes]
rs7905635	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7911886	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7924004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26227400-26230200	Weak transcription	Brain Germinal Matrix	brain
2	chr10:26227800-26229800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26228600-26229000	Enhancers	Pancreatic Islets	Pancreatic Islet

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