Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10128512	0.83[YRI][hapmap]
rs10828918	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10828930	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014890	0.83[AMR][1000 genomes]
rs11014909	0.83[AMR][1000 genomes]
rs11014915	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11014916	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11014926	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11014941	0.82[AFR][1000 genomes]
rs11814511	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814982	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11819023	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241145	0.90[YRI][hapmap]
rs12243707	0.91[AFR][1000 genomes]
rs12247532	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249093	0.83[YRI][hapmap]
rs12260381	1.00[AMR][1000 genomes]
rs12261183	0.83[AMR][1000 genomes]
rs12263784	0.89[AFR][1000 genomes]
rs12264399	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265482	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085644	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7098026	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7905635	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26250800-26261200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26252800-26255400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:26252800-26255400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:26254800-26270200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:26255000-26263200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:26255200-26256400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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