Variant report

Variant	rs12261183
Chromosome Location	chr10:26300565-26300566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10828918	0.83[AMR][1000 genomes]
rs10828930	0.83[AMR][1000 genomes]
rs11014879	0.85[AMR][1000 genomes]
rs11014881	0.83[AMR][1000 genomes]
rs11014890	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014909	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814511	0.83[AMR][1000 genomes]
rs11819023	0.83[AMR][1000 genomes]
rs12247532	0.83[AMR][1000 genomes]
rs12252319	0.85[AMR][1000 genomes]
rs12260381	0.83[AMR][1000 genomes]
rs12264399	0.83[AMR][1000 genomes]
rs12265482	0.83[AMR][1000 genomes]
rs7896360	0.83[AMR][1000 genomes]
rs7905996	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7913203	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26284600-26300800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26300400-26301000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26300400-26305400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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