Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10128512	0.81[YRI][hapmap]
rs10828930	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014890	0.83[AMR][1000 genomes]
rs11014909	0.83[AMR][1000 genomes]
rs11014915	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11014916	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11014926	1.00[YRI][hapmap]
rs11814511	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814982	0.83[AMR][1000 genomes]
rs11819023	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241145	0.89[YRI][hapmap]
rs12243707	0.87[AFR][1000 genomes]
rs12247532	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249093	0.81[YRI][hapmap]
rs12260381	1.00[AMR][1000 genomes]
rs12261183	0.83[AMR][1000 genomes]
rs12263784	0.85[AFR][1000 genomes]
rs12264399	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265482	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085644	1.00[YRI][hapmap]
rs7098026	1.00[YRI][hapmap]
rs7896360	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7905635	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26254800-26270200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:26264200-26267200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26264200-26273200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:26264400-26289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:26264600-26268000	Weak transcription	NH-A	brain

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