Variant report
| Variant | rs7098026 |
|---|---|
| Chromosome Location | chr10:26344282-26344283 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10128512 | 0.80[YRI][hapmap] |
| rs10828918 | 1.00[YRI][hapmap] |
| rs10828930 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs11014881 | 0.82[AFR][1000 genomes] |
| rs11014915 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11014916 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11014926 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11014941 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11014956 | 1.00[AMR][1000 genomes] |
| rs11498425 | 1.00[AMR][1000 genomes] |
| rs11814511 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11814982 | 0.91[AFR][1000 genomes] |
| rs11819023 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs12241145 | 0.90[YRI][hapmap] |
| rs12247532 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs12249093 | 0.80[YRI][hapmap] |
| rs12250247 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12261092 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12263784 | 0.80[AFR][1000 genomes] |
| rs12264399 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs12265482 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs12268743 | 1.00[AMR][1000 genomes] |
| rs12385769 | 1.00[AMR][1000 genomes] |
| rs7085644 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7896360 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs7905635 | 0.80[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1792417 | chr10:26263695-26395038 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv1798878 | chr10:26339336-26355576 | Weak transcription ZNF genes & repeats Enhancers Strong transcription | n/a | n/a | inside rSNPs | diseases |
| 3 | esv1803823 | chr10:26343356-26352012 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv894975 | chr10:26343356-27014467 | Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26341800-26346800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr10:26344200-26355800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
