Variant report

Variant	rs12268743
Chromosome Location	chr10:26391794-26391795
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11014915	1.00[AMR][1000 genomes]
rs11014916	1.00[AMR][1000 genomes]
rs11014926	1.00[AMR][1000 genomes]
rs11014941	1.00[AMR][1000 genomes]
rs11014956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250247	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261092	1.00[AMR][1000 genomes]
rs12385769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085644	1.00[AMR][1000 genomes]
rs7098026	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26389200-26392000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26390400-26392000	Strong transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26391000-26393600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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