Variant report

Variant	rs12250247
Chromosome Location	chr10:26365663-26365664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11014915	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014916	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014926	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014956	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498425	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814982	0.80[AFR][1000 genomes]
rs12247532	0.82[AFR][1000 genomes]
rs12261092	1.00[AMR][1000 genomes]
rs12268743	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12385769	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085644	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098026	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3346593	chr10:26363746-26365794	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26362400-26368000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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