Variant report

Variant	rs12261092
Chromosome Location	chr10:26335967-26335968
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10828930	0.81[AFR][1000 genomes]
rs11014915	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014916	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014926	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014956	1.00[AMR][1000 genomes]
rs11498425	1.00[AMR][1000 genomes]
rs11814982	0.82[AFR][1000 genomes]
rs12247532	0.84[AFR][1000 genomes]
rs12250247	1.00[AMR][1000 genomes]
rs12268743	1.00[AMR][1000 genomes]
rs12385769	1.00[AMR][1000 genomes]
rs7085644	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098026	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26327600-26336800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26334200-26342600	Weak transcription	Aorta	Aorta
3	chr10:26335800-26336200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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