Variant report

Variant	rs12241145
Chromosome Location	chr10:26255646-26255647
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10047328	0.89[AMR][1000 genomes]
rs10508708	0.88[AFR][1000 genomes]
rs10508709	0.85[AFR][1000 genomes]
rs10828918	0.89[YRI][hapmap]
rs10828919	0.85[AFR][1000 genomes]
rs10828920	0.82[AFR][1000 genomes]
rs10828921	0.88[AFR][1000 genomes]
rs10828929	0.85[AFR][1000 genomes]
rs10828930	0.90[YRI][hapmap]
rs10828931	0.85[AFR][1000 genomes]
rs10828932	0.85[AFR][1000 genomes]
rs10828933	0.85[AFR][1000 genomes]
rs10828934	0.85[AFR][1000 genomes]
rs10828935	0.88[AFR][1000 genomes]
rs10828936	0.88[AFR][1000 genomes]
rs10828937	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10828938	0.85[AFR][1000 genomes]
rs11014880	0.83[AFR][1000 genomes]
rs11014882	0.85[AFR][1000 genomes]
rs11014883	0.85[AFR][1000 genomes]
rs11014884	0.88[AFR][1000 genomes]
rs11014891	0.88[AFR][1000 genomes]
rs11014893	0.85[AFR][1000 genomes]
rs11014894	0.88[AFR][1000 genomes]
rs11014896	0.88[AFR][1000 genomes]
rs11014897	0.88[AFR][1000 genomes]
rs11014898	0.88[AFR][1000 genomes]
rs11014899	0.88[AFR][1000 genomes]
rs11014900	0.88[AFR][1000 genomes]
rs11014902	0.85[AFR][1000 genomes]
rs11014903	0.83[AFR][1000 genomes]
rs11014905	0.85[AFR][1000 genomes]
rs11014906	0.85[AFR][1000 genomes]
rs11014908	0.88[AFR][1000 genomes]
rs11014915	0.90[YRI][hapmap]
rs11014916	0.91[YRI][hapmap]
rs11014926	0.88[YRI][hapmap]
rs11498421	0.88[AFR][1000 genomes]
rs11814511	0.90[YRI][hapmap]
rs11818458	0.85[AFR][1000 genomes]
rs11819023	0.91[YRI][hapmap]
rs12240655	0.88[AFR][1000 genomes]
rs12240899	0.88[AFR][1000 genomes]
rs12242801	0.88[AFR][1000 genomes]
rs12246034	0.88[AFR][1000 genomes]
rs12247121	0.85[AFR][1000 genomes]
rs12247532	0.91[YRI][hapmap]
rs12247695	0.83[AFR][1000 genomes]
rs12247765	0.85[AFR][1000 genomes]
rs12252321	0.88[AFR][1000 genomes]
rs12252394	0.88[AFR][1000 genomes]
rs12254208	0.87[AFR][1000 genomes]
rs12254559	0.88[AFR][1000 genomes]
rs12257094	0.88[AFR][1000 genomes]
rs12257119	0.85[AFR][1000 genomes]
rs12257345	0.87[AFR][1000 genomes]
rs12257431	0.85[AFR][1000 genomes]
rs12258855	0.87[AFR][1000 genomes]
rs12259136	0.88[AFR][1000 genomes]
rs12260539	0.85[AFR][1000 genomes]
rs12261043	0.83[AFR][1000 genomes]
rs12261300	0.88[AFR][1000 genomes]
rs12263132	0.85[AFR][1000 genomes]
rs12263293	0.85[AFR][1000 genomes]
rs12263841	0.87[AFR][1000 genomes]
rs12263854	0.81[AFR][1000 genomes]
rs12264399	0.91[YRI][hapmap]
rs12265280	0.88[AFR][1000 genomes]
rs12265417	0.85[AFR][1000 genomes]
rs12265482	0.91[YRI][hapmap]
rs12266492	0.88[AFR][1000 genomes]
rs12268406	0.85[AFR][1000 genomes]
rs12268729	0.85[AFR][1000 genomes]
rs16926512	0.85[AFR][1000 genomes]
rs41279906	0.85[AFR][1000 genomes]
rs60947855	0.82[AFR][1000 genomes]
rs6482525	0.82[AFR][1000 genomes]
rs6482526	0.85[AFR][1000 genomes]
rs6482527	0.85[AFR][1000 genomes]
rs7077414	0.88[AFR][1000 genomes]
rs7085644	0.91[YRI][hapmap]
rs7089743	0.85[AFR][1000 genomes]
rs7089870	0.85[AFR][1000 genomes]
rs7093831	0.84[AFR][1000 genomes]
rs7094435	0.83[AFR][1000 genomes]
rs7095192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098026	0.90[YRI][hapmap]
rs7895308	0.85[AFR][1000 genomes]
rs7896360	0.90[YRI][hapmap]
rs7902513	0.88[AFR][1000 genomes]
rs7903177	0.88[AFR][1000 genomes]
rs7903459	0.88[AFR][1000 genomes]
rs7903859	0.88[AFR][1000 genomes]
rs7904021	0.88[AFR][1000 genomes]
rs7905783	0.85[AFR][1000 genomes]
rs7906424	0.85[AFR][1000 genomes]
rs7906451	0.88[AFR][1000 genomes]
rs7913074	0.88[AFR][1000 genomes]
rs7916305	0.85[AFR][1000 genomes]
rs7917199	0.88[AFR][1000 genomes]
rs7917203	0.88[AFR][1000 genomes]
rs7917238	0.85[AFR][1000 genomes]
rs7918334	0.88[AFR][1000 genomes]
rs7919219	0.85[AFR][1000 genomes]
rs7919492	0.85[AFR][1000 genomes]
rs7922822	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26250800-26261200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26254800-26270200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:26255000-26263200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:26255200-26256400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:26255400-26255800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr10:26255400-26256400	Enhancers	Brain Germinal Matrix	brain
7	chr10:26255600-26256000	Enhancers	Cortex derived primary cultured neurospheres	brain

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