Variant report

Variant	rs11014880
Chromosome Location	chr10:26259816-26259817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10508708	0.94[AFR][1000 genomes]
rs10508709	0.92[AFR][1000 genomes]
rs10828919	0.92[AFR][1000 genomes]
rs10828920	0.88[AFR][1000 genomes]
rs10828921	0.94[AFR][1000 genomes]
rs10828929	0.92[AFR][1000 genomes]
rs10828931	0.92[AFR][1000 genomes]
rs10828932	0.92[AFR][1000 genomes]
rs10828933	0.92[AFR][1000 genomes]
rs10828934	0.92[AFR][1000 genomes]
rs10828935	0.94[AFR][1000 genomes]
rs10828936	0.94[AFR][1000 genomes]
rs10828937	0.81[AFR][1000 genomes]
rs10828938	0.92[AFR][1000 genomes]
rs11014827	1.00[ASN][1000 genomes]
rs11014875	1.00[ASN][1000 genomes]
rs11014878	1.00[ASN][1000 genomes]
rs11014882	0.92[AFR][1000 genomes]
rs11014883	0.92[AFR][1000 genomes]
rs11014884	0.94[AFR][1000 genomes]
rs11014891	0.94[AFR][1000 genomes]
rs11014893	0.92[AFR][1000 genomes]
rs11014894	0.94[AFR][1000 genomes]
rs11014896	0.94[AFR][1000 genomes]
rs11014897	0.94[AFR][1000 genomes]
rs11014898	0.94[AFR][1000 genomes]
rs11014899	0.94[AFR][1000 genomes]
rs11014900	0.94[AFR][1000 genomes]
rs11014902	0.92[AFR][1000 genomes]
rs11014903	0.90[AFR][1000 genomes]
rs11014905	0.92[AFR][1000 genomes]
rs11014906	0.92[AFR][1000 genomes]
rs11014908	0.94[AFR][1000 genomes]
rs11014912	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014914	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11498421	0.94[AFR][1000 genomes]
rs11814242	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11815844	0.81[AFR][1000 genomes]
rs11818458	0.92[AFR][1000 genomes]
rs12240655	0.94[AFR][1000 genomes]
rs12240899	0.94[AFR][1000 genomes]
rs12241145	0.83[AFR][1000 genomes]
rs12241235	1.00[ASN][1000 genomes]
rs12242801	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12245940	1.00[ASN][1000 genomes]
rs12246034	0.94[AFR][1000 genomes]
rs12247121	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12247695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12247765	0.92[AFR][1000 genomes]
rs12248874	1.00[ASN][1000 genomes]
rs12248876	1.00[ASN][1000 genomes]
rs12250378	1.00[ASN][1000 genomes]
rs12252321	0.94[AFR][1000 genomes]
rs12252394	0.94[AFR][1000 genomes]
rs12252491	1.00[ASN][1000 genomes]
rs12252531	1.00[ASN][1000 genomes]
rs12254208	0.93[AFR][1000 genomes]
rs12254559	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12257094	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12257119	0.92[AFR][1000 genomes]
rs12257345	0.93[AFR][1000 genomes]
rs12257407	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12257431	0.92[AFR][1000 genomes]
rs12258855	0.93[AFR][1000 genomes]
rs12259136	0.94[AFR][1000 genomes]
rs12260539	0.92[AFR][1000 genomes]
rs12261043	0.90[AFR][1000 genomes]
rs12261300	0.94[AFR][1000 genomes]
rs12263132	0.92[AFR][1000 genomes]
rs12263293	0.92[AFR][1000 genomes]
rs12263841	0.93[AFR][1000 genomes]
rs12265280	0.94[AFR][1000 genomes]
rs12265417	0.92[AFR][1000 genomes]
rs12266492	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12267515	1.00[ASN][1000 genomes]
rs12268406	0.92[AFR][1000 genomes]
rs12268729	0.92[AFR][1000 genomes]
rs12269208	1.00[ASN][1000 genomes]
rs1339802	1.00[ASN][1000 genomes]
rs1546698	1.00[ASN][1000 genomes]
rs1546699	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546700	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1589422	1.00[ASN][1000 genomes]
rs1591905	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16926449	1.00[ASN][1000 genomes]
rs16926463	1.00[ASN][1000 genomes]
rs16926465	1.00[ASN][1000 genomes]
rs16926472	1.00[ASN][1000 genomes]
rs16926502	1.00[ASN][1000 genomes]
rs16926512	0.92[AFR][1000 genomes]
rs17450092	1.00[ASN][1000 genomes]
rs2153343	1.00[ASN][1000 genomes]
rs2153344	1.00[ASN][1000 genomes]
rs2176939	1.00[ASN][1000 genomes]
rs2185325	1.00[ASN][1000 genomes]
rs28657699	1.00[ASN][1000 genomes]
rs41279906	0.92[AFR][1000 genomes]
rs55737170	0.82[EUR][1000 genomes]
rs59619901	1.00[ASN][1000 genomes]
rs60390793	1.00[ASN][1000 genomes]
rs60947855	0.88[AFR][1000 genomes]
rs6482525	0.88[AFR][1000 genomes]
rs6482526	0.92[AFR][1000 genomes]
rs6482527	0.92[AFR][1000 genomes]
rs7069867	1.00[ASN][1000 genomes]
rs7075824	1.00[ASN][1000 genomes]
rs7076406	1.00[ASN][1000 genomes]
rs7076680	1.00[ASN][1000 genomes]
rs7077175	1.00[ASN][1000 genomes]
rs7077414	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7089743	0.92[AFR][1000 genomes]
rs7089870	0.92[AFR][1000 genomes]
rs7093831	0.91[AFR][1000 genomes]
rs7094435	0.90[AFR][1000 genomes]
rs7094802	1.00[ASN][1000 genomes]
rs7095192	0.81[AFR][1000 genomes]
rs7098101	1.00[ASN][1000 genomes]
rs7098369	1.00[ASN][1000 genomes]
rs73610357	0.82[EUR][1000 genomes]
rs73610358	1.00[ASN][1000 genomes]
rs7895308	0.92[AFR][1000 genomes]
rs7900713	0.81[AFR][1000 genomes]
rs7902513	0.94[AFR][1000 genomes]
rs7903177	0.94[AFR][1000 genomes]
rs7903459	0.94[AFR][1000 genomes]
rs7903859	0.94[AFR][1000 genomes]
rs7904021	0.94[AFR][1000 genomes]
rs7905783	0.92[AFR][1000 genomes]
rs7906424	0.92[AFR][1000 genomes]
rs7906451	0.94[AFR][1000 genomes]
rs7911905	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7913074	0.94[AFR][1000 genomes]
rs7914207	1.00[ASN][1000 genomes]
rs7916305	0.92[AFR][1000 genomes]
rs7917199	0.94[AFR][1000 genomes]
rs7917203	0.94[AFR][1000 genomes]
rs7917238	0.92[AFR][1000 genomes]
rs7918334	0.94[AFR][1000 genomes]
rs7918480	1.00[ASN][1000 genomes]
rs7918781	0.82[EUR][1000 genomes]
rs7918904	0.82[EUR][1000 genomes]
rs7919219	0.92[AFR][1000 genomes]
rs7919492	0.92[AFR][1000 genomes]
rs7922822	0.92[AFR][1000 genomes]
rs9731566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3370355	chr10:26259802-26260075	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26250800-26261200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26254800-26270200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:26255000-26263200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:26255800-26263800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:26256400-26261400	Weak transcription	Brain Germinal Matrix	brain

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