Variant report

Variant	rs11014912
Chromosome Location	chr10:26307246-26307247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10508708	1.00[CHB][hapmap]
rs10508709	1.00[CHB][hapmap]
rs10828929	1.00[CHB][hapmap]
rs10828931	1.00[CHB][hapmap]
rs10828932	1.00[CHB][hapmap]
rs10828934	1.00[CHB][hapmap]
rs10828938	1.00[CHB][hapmap]
rs11014875	1.00[CHB][hapmap]
rs11014880	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014884	1.00[CHB][hapmap]
rs11014891	1.00[CHB][hapmap]
rs11014893	1.00[CHB][hapmap]
rs11014894	1.00[CHB][hapmap]
rs11014896	1.00[CHB][hapmap]
rs11014897	1.00[CHB][hapmap]
rs11014898	1.00[CHB][hapmap]
rs11014900	1.00[CHB][hapmap]
rs11014905	1.00[CHB][hapmap]
rs11014910	1.00[CHB][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes]
rs11014911	1.00[CHB][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes]
rs11014914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814242	1.00[CHB][hapmap]
rs11818458	1.00[CHB][hapmap]
rs12240899	1.00[CHB][hapmap]
rs12246034	1.00[CHB][hapmap]
rs12247695	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12250378	1.00[CHB][hapmap]
rs12252321	1.00[CHB][hapmap]
rs12252394	1.00[CHB][hapmap]
rs12254208	1.00[CHB][hapmap]
rs12257119	1.00[CHB][hapmap]
rs12257431	1.00[CHB][hapmap]
rs12259136	1.00[CHB][hapmap]
rs12261043	1.00[CHB][hapmap]
rs12263132	1.00[CHB][hapmap]
rs12265280	1.00[CHB][hapmap]
rs12268406	1.00[CHB][hapmap]
rs12268729	1.00[CHB][hapmap]
rs1339802	1.00[CHB][hapmap]
rs1521037	0.83[CEU][hapmap]
rs1546699	0.95[EUR][1000 genomes]
rs1546700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs16926502	1.00[CHB][hapmap]
rs16926512	1.00[CHB][hapmap]
rs16926578	1.00[CHB][hapmap]
rs16926660	1.00[CHB][hapmap]
rs17450092	1.00[CHB][hapmap]
rs2176939	1.00[CHB][hapmap]
rs2185325	1.00[CHB][hapmap]
rs55737170	0.80[EUR][1000 genomes]
rs6482526	1.00[CHB][hapmap]
rs6482527	1.00[CHB][hapmap]
rs7077414	1.00[CHB][hapmap]
rs7089743	1.00[CHB][hapmap]
rs73610357	0.80[EUR][1000 genomes]
rs7895308	1.00[CHB][hapmap]
rs7903177	1.00[CHB][hapmap]
rs7905783	1.00[CHB][hapmap]
rs7906451	1.00[CHB][hapmap]
rs7913074	1.00[CHB][hapmap]
rs7914207	1.00[CHB][hapmap]
rs7916305	1.00[CHB][hapmap]
rs7918334	1.00[CHB][hapmap]
rs7918480	1.00[CHB][hapmap]
rs7918781	0.80[EUR][1000 genomes]
rs7918904	0.80[EUR][1000 genomes]
rs7919219	1.00[CHB][hapmap]
rs9731566	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26302400-26310200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26304000-26313200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26306000-26313600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:26306000-26314200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:26306200-26314600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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