Variant report

Variant	rs16926578
Chromosome Location	chr10:26379661-26379662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10508708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828919	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828920	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828921	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828933	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828935	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828936	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11014878	0.81[EUR][1000 genomes]
rs11014882	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014883	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014899	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014902	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014903	1.00[ASN][1000 genomes]
rs11014905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014906	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014908	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11014911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11014912	1.00[CHB][hapmap]
rs11014914	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11498421	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814061	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11815844	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12240655	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242801	0.81[EUR][1000 genomes]
rs12245940	0.81[EUR][1000 genomes]
rs12246034	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247121	0.81[EUR][1000 genomes]
rs12247695	1.00[ASN][1000 genomes]
rs12247765	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12252321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254559	0.81[EUR][1000 genomes]
rs12257094	0.81[EUR][1000 genomes]
rs12257119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257345	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257407	0.81[EUR][1000 genomes]
rs12257431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258855	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259068	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12260539	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12261300	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263293	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263841	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265280	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265417	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266492	0.81[EUR][1000 genomes]
rs12266659	1.00[ASN][1000 genomes]
rs12268406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268729	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs1546698	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1546700	1.00[CHB][hapmap]
rs1589422	0.81[EUR][1000 genomes]
rs1591905	0.81[EUR][1000 genomes]
rs16926502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs16926512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926590	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs16926660	1.00[CHB][hapmap]
rs17450092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17666959	0.82[EUR][1000 genomes]
rs17738599	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738642	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153343	0.81[EUR][1000 genomes]
rs2153344	0.81[EUR][1000 genomes]
rs2176939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2185325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs28532340	1.00[ASN][1000 genomes]
rs28540341	1.00[ASN][1000 genomes]
rs34748570	1.00[ASN][1000 genomes]
rs41279906	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634980	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947731	1.00[ASN][1000 genomes]
rs56093148	1.00[ASN][1000 genomes]
rs57687518	0.84[AFR][1000 genomes]
rs58129501	1.00[ASN][1000 genomes]
rs58199231	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60947855	1.00[ASN][1000 genomes]
rs61112806	1.00[ASN][1000 genomes]
rs6482525	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482527	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069867	0.81[EUR][1000 genomes]
rs7077414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7089743	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089870	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093831	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094435	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793215	0.84[AFR][1000 genomes]
rs72793218	0.90[AFR][1000 genomes]
rs72795806	1.00[ASN][1000 genomes]
rs72795815	1.00[ASN][1000 genomes]
rs72795837	1.00[ASN][1000 genomes]
rs74126386	0.84[AFR][1000 genomes]
rs74126400	0.90[AFR][1000 genomes]
rs74126401	0.90[AFR][1000 genomes]
rs74129103	0.90[AFR][1000 genomes]
rs7895308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900713	1.00[ASN][1000 genomes]
rs7902513	0.81[EUR][1000 genomes]
rs7903177	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903459	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903859	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904021	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906424	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911905	0.81[EUR][1000 genomes]
rs7913074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914207	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7916305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917199	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917203	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917238	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7919219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919492	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922822	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9731566	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26373400-26390400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26376600-26382200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26379600-26380000	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links