Variant report

Variant	rs2176939
Chromosome Location	chr10:26252559-26252560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10508708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10508709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10828919	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10828920	1.00[EUR][1000 genomes]
rs10828921	1.00[EUR][1000 genomes]
rs10828929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10828931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10828932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10828933	1.00[EUR][1000 genomes]
rs10828934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10828935	1.00[EUR][1000 genomes]
rs10828936	1.00[EUR][1000 genomes]
rs10828938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014827	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014878	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014880	1.00[ASN][1000 genomes]
rs11014882	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11014883	1.00[EUR][1000 genomes]
rs11014884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014899	1.00[EUR][1000 genomes]
rs11014900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014902	1.00[EUR][1000 genomes]
rs11014903	0.95[EUR][1000 genomes]
rs11014905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11014906	1.00[EUR][1000 genomes]
rs11014908	1.00[EUR][1000 genomes]
rs11014910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs11014911	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs11014912	1.00[CHB][hapmap]
rs11014914	1.00[CHB][hapmap]
rs11498421	1.00[EUR][1000 genomes]
rs11814061	1.00[EUR][1000 genomes]
rs11814242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815844	1.00[EUR][1000 genomes]
rs11818458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs12240655	1.00[EUR][1000 genomes]
rs12240899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12241235	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245940	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12247121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247765	1.00[EUR][1000 genomes]
rs12248874	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248876	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12252394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12252491	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252531	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12254559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12257345	1.00[EUR][1000 genomes]
rs12257407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12258855	1.00[EUR][1000 genomes]
rs12259068	1.00[EUR][1000 genomes]
rs12259136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs12260539	1.00[EUR][1000 genomes]
rs12261043	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs12261300	1.00[EUR][1000 genomes]
rs12263132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12263293	1.00[EUR][1000 genomes]
rs12263841	1.00[EUR][1000 genomes]
rs12265280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12265417	1.00[EUR][1000 genomes]
rs12266492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266659	0.98[EUR][1000 genomes]
rs12267515	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12268729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12269208	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546698	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546699	1.00[ASN][1000 genomes]
rs1546700	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1589422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926465	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16926578	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17450092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738599	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17738642	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2153343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657699	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279906	1.00[EUR][1000 genomes]
rs4634980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58199231	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59619901	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60390793	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60947855	0.98[EUR][1000 genomes]
rs6482525	1.00[EUR][1000 genomes]
rs6482526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs6482527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7069867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075824	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076406	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076680	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077175	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089743	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7089870	1.00[EUR][1000 genomes]
rs7093831	1.00[EUR][1000 genomes]
rs7094435	1.00[EUR][1000 genomes]
rs7094802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098101	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098369	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73610358	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74125825	0.82[EUR][1000 genomes]
rs7895308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7902513	1.00[EUR][1000 genomes]
rs7903177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7903459	1.00[EUR][1000 genomes]
rs7903859	1.00[EUR][1000 genomes]
rs7904021	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7905783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7906424	1.00[EUR][1000 genomes]
rs7906451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7911905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7914207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7917199	1.00[EUR][1000 genomes]
rs7917203	1.00[EUR][1000 genomes]
rs7917238	1.00[EUR][1000 genomes]
rs7918334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7918480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7919492	1.00[EUR][1000 genomes]
rs7922822	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26244200-26254400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:26249800-26252800	Enhancers	Brain Germinal Matrix	brain
3	chr10:26250800-26261200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26252200-26252600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:26252400-26252600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:26252400-26252800	Enhancers	Pancreatic Islets	Pancreatic Islet

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