Variant report

Variant	rs12252491
Chromosome Location	chr10:26178543-26178544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26178024..26180350-chr10:26180527..26183342,2	MCF-7	breast:

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10508708	0.98[EUR][1000 genomes]
rs10508709	0.98[EUR][1000 genomes]
rs10828919	0.98[EUR][1000 genomes]
rs10828920	0.98[EUR][1000 genomes]
rs10828921	0.98[EUR][1000 genomes]
rs10828929	0.98[EUR][1000 genomes]
rs10828931	0.98[EUR][1000 genomes]
rs10828932	0.98[EUR][1000 genomes]
rs10828933	0.98[EUR][1000 genomes]
rs10828934	0.98[EUR][1000 genomes]
rs10828935	0.98[EUR][1000 genomes]
rs10828936	0.98[EUR][1000 genomes]
rs10828938	0.98[EUR][1000 genomes]
rs11014827	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014875	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014878	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014880	1.00[ASN][1000 genomes]
rs11014882	0.98[EUR][1000 genomes]
rs11014883	0.98[EUR][1000 genomes]
rs11014884	0.98[EUR][1000 genomes]
rs11014891	0.98[EUR][1000 genomes]
rs11014893	0.98[EUR][1000 genomes]
rs11014894	0.98[EUR][1000 genomes]
rs11014896	0.98[EUR][1000 genomes]
rs11014897	0.98[EUR][1000 genomes]
rs11014898	0.98[EUR][1000 genomes]
rs11014899	0.98[EUR][1000 genomes]
rs11014900	0.98[EUR][1000 genomes]
rs11014902	0.98[EUR][1000 genomes]
rs11014903	0.93[EUR][1000 genomes]
rs11014905	0.98[EUR][1000 genomes]
rs11014906	0.98[EUR][1000 genomes]
rs11014908	0.98[EUR][1000 genomes]
rs11014910	0.95[EUR][1000 genomes]
rs11014911	0.95[EUR][1000 genomes]
rs11498421	0.98[EUR][1000 genomes]
rs11814061	0.98[EUR][1000 genomes]
rs11814242	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815844	0.98[EUR][1000 genomes]
rs11818458	0.95[EUR][1000 genomes]
rs12240655	0.98[EUR][1000 genomes]
rs12240899	0.98[EUR][1000 genomes]
rs12241235	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242801	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245940	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246034	0.98[EUR][1000 genomes]
rs12247121	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247765	0.98[EUR][1000 genomes]
rs12248874	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250378	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252321	0.98[EUR][1000 genomes]
rs12252394	0.98[EUR][1000 genomes]
rs12252531	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254208	0.98[EUR][1000 genomes]
rs12254559	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257094	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257119	0.98[EUR][1000 genomes]
rs12257345	0.98[EUR][1000 genomes]
rs12257407	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257431	0.98[EUR][1000 genomes]
rs12258855	0.98[EUR][1000 genomes]
rs12259068	0.98[EUR][1000 genomes]
rs12259136	0.95[EUR][1000 genomes]
rs12260539	0.98[EUR][1000 genomes]
rs12261043	0.95[EUR][1000 genomes]
rs12261300	0.98[EUR][1000 genomes]
rs12263132	0.98[EUR][1000 genomes]
rs12263293	0.98[EUR][1000 genomes]
rs12263841	0.98[EUR][1000 genomes]
rs12265280	0.98[EUR][1000 genomes]
rs12265417	0.98[EUR][1000 genomes]
rs12266492	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266659	0.95[EUR][1000 genomes]
rs12267515	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268406	0.98[EUR][1000 genomes]
rs12268729	0.98[EUR][1000 genomes]
rs12269208	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339802	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546698	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546699	1.00[ASN][1000 genomes]
rs1546700	1.00[ASN][1000 genomes]
rs1589422	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591905	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926449	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926463	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926465	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926472	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926502	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926512	0.98[EUR][1000 genomes]
rs17450092	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738599	0.98[EUR][1000 genomes]
rs17738642	0.98[EUR][1000 genomes]
rs2153343	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153344	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176939	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185325	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657699	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279906	0.98[EUR][1000 genomes]
rs4634980	0.98[EUR][1000 genomes]
rs58199231	0.95[EUR][1000 genomes]
rs59619901	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60390793	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60947855	0.95[EUR][1000 genomes]
rs6482525	0.98[EUR][1000 genomes]
rs6482526	0.98[EUR][1000 genomes]
rs6482527	0.98[EUR][1000 genomes]
rs7069867	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076406	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076680	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077414	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089743	0.98[EUR][1000 genomes]
rs7089870	0.98[EUR][1000 genomes]
rs7093831	0.98[EUR][1000 genomes]
rs7094435	0.98[EUR][1000 genomes]
rs7094802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098101	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73610358	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74125825	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7895308	0.98[EUR][1000 genomes]
rs7902513	0.98[EUR][1000 genomes]
rs7903177	0.98[EUR][1000 genomes]
rs7903459	0.98[EUR][1000 genomes]
rs7903859	0.98[EUR][1000 genomes]
rs7904021	0.98[EUR][1000 genomes]
rs7905783	0.98[EUR][1000 genomes]
rs7906424	0.98[EUR][1000 genomes]
rs7906451	0.98[EUR][1000 genomes]
rs7911905	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913074	0.98[EUR][1000 genomes]
rs7914207	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916305	0.98[EUR][1000 genomes]
rs7917199	0.98[EUR][1000 genomes]
rs7917203	0.98[EUR][1000 genomes]
rs7917238	0.98[EUR][1000 genomes]
rs7918334	0.98[EUR][1000 genomes]
rs7918480	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919219	0.98[EUR][1000 genomes]
rs7919492	0.98[EUR][1000 genomes]
rs7922822	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26176200-26180400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:26178000-26178800	Enhancers	HUES48 Cell Line	embryonic stem cell

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