Variant report

Variant	rs1546700
Chromosome Location	chr10:26244089-26244090
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10508708	1.00[CHB][hapmap]
rs10508709	1.00[CHB][hapmap]
rs10828929	1.00[CHB][hapmap]
rs10828931	1.00[CHB][hapmap]
rs10828932	1.00[CHB][hapmap]
rs10828934	1.00[CHB][hapmap]
rs10828938	1.00[CHB][hapmap]
rs11014827	1.00[ASN][1000 genomes]
rs11014874	0.83[AFR][1000 genomes]
rs11014875	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11014878	1.00[ASN][1000 genomes]
rs11014880	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014884	1.00[CHB][hapmap]
rs11014891	1.00[CHB][hapmap]
rs11014893	1.00[CHB][hapmap]
rs11014894	1.00[CHB][hapmap]
rs11014896	1.00[CHB][hapmap]
rs11014897	1.00[CHB][hapmap]
rs11014898	1.00[CHB][hapmap]
rs11014900	1.00[CHB][hapmap]
rs11014905	1.00[CHB][hapmap]
rs11014910	1.00[CHB][hapmap]
rs11014911	1.00[CHB][hapmap]
rs11014912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs11014914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs11814242	1.00[CHB][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11818458	1.00[CHB][hapmap]
rs12240899	1.00[CHB][hapmap]
rs12241235	1.00[ASN][1000 genomes]
rs12242801	1.00[ASN][1000 genomes]
rs12245940	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12246034	1.00[CHB][hapmap]
rs12247121	1.00[ASN][1000 genomes]
rs12247695	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248874	1.00[ASN][1000 genomes]
rs12248876	1.00[ASN][1000 genomes]
rs12250378	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12252321	1.00[CHB][hapmap]
rs12252394	1.00[CHB][hapmap]
rs12252491	1.00[ASN][1000 genomes]
rs12252531	1.00[ASN][1000 genomes]
rs12254208	1.00[CHB][hapmap]
rs12254559	1.00[ASN][1000 genomes]
rs12257094	1.00[ASN][1000 genomes]
rs12257119	1.00[CHB][hapmap]
rs12257407	1.00[ASN][1000 genomes]
rs12257431	1.00[CHB][hapmap]
rs12259136	1.00[CHB][hapmap]
rs12261043	1.00[CHB][hapmap]
rs12263132	1.00[CHB][hapmap]
rs12265280	1.00[CHB][hapmap]
rs12266492	1.00[ASN][1000 genomes]
rs12267515	1.00[ASN][1000 genomes]
rs12268406	1.00[CHB][hapmap]
rs12268729	1.00[CHB][hapmap]
rs12269208	1.00[ASN][1000 genomes]
rs1339802	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1521037	0.82[CEU][hapmap]
rs1546698	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1546699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1589422	1.00[ASN][1000 genomes]
rs1591905	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16926449	1.00[ASN][1000 genomes]
rs16926463	1.00[ASN][1000 genomes]
rs16926465	1.00[ASN][1000 genomes]
rs16926472	1.00[ASN][1000 genomes]
rs16926502	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16926512	1.00[CHB][hapmap]
rs16926578	1.00[CHB][hapmap]
rs17450092	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2153343	1.00[ASN][1000 genomes]
rs2153344	1.00[ASN][1000 genomes]
rs2176939	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2185325	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28657699	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55737170	0.83[EUR][1000 genomes]
rs59619901	1.00[ASN][1000 genomes]
rs60390793	1.00[ASN][1000 genomes]
rs6482526	1.00[CHB][hapmap]
rs6482527	1.00[CHB][hapmap]
rs7069867	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7070437	0.82[YRI][hapmap];0.87[AFR][1000 genomes]
rs7075824	1.00[ASN][1000 genomes]
rs7076406	1.00[ASN][1000 genomes]
rs7076680	1.00[ASN][1000 genomes]
rs7077175	1.00[ASN][1000 genomes]
rs7077414	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7089743	1.00[CHB][hapmap]
rs7094802	1.00[ASN][1000 genomes]
rs7098101	1.00[ASN][1000 genomes]
rs7098369	1.00[ASN][1000 genomes]
rs73610357	0.83[EUR][1000 genomes]
rs73610358	1.00[ASN][1000 genomes]
rs7895308	1.00[CHB][hapmap]
rs7903177	1.00[CHB][hapmap]
rs7905783	1.00[CHB][hapmap]
rs7906451	1.00[CHB][hapmap]
rs7911905	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7913074	1.00[CHB][hapmap]
rs7914207	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7916305	1.00[CHB][hapmap]
rs7918334	1.00[CHB][hapmap]
rs7918480	1.00[CHB][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7918781	0.83[EUR][1000 genomes]
rs7918904	0.83[EUR][1000 genomes]
rs7919219	1.00[CHB][hapmap]
rs9731566	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26242600-26245800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26243200-26245800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:26243800-26244400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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