Variant report

Variant	rs55737170
Chromosome Location	chr10:26164567-26164568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11014880	0.82[EUR][1000 genomes]
rs11014912	0.80[EUR][1000 genomes]
rs11014914	0.80[EUR][1000 genomes]
rs12247695	0.83[EUR][1000 genomes]
rs1546699	0.83[EUR][1000 genomes]
rs1546700	0.83[EUR][1000 genomes]
rs73610357	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74125825	1.00[ASN][1000 genomes]
rs74125827	1.00[ASN][1000 genomes]
rs7918781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918904	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9731566	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26163600-26164600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr10:26163800-26164600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:26164000-26164600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:26164000-26164600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:26164000-26164600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:26164200-26164600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:26164200-26164600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:26164200-26164600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:26164200-26164600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:26164200-26166400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:26164400-26164600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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