Variant report

Variant	rs7070437
Chromosome Location	chr10:26231850-26231851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10508708	0.88[YRI][hapmap]
rs10508709	0.82[YRI][hapmap]
rs10508713	1.00[CHB][hapmap]
rs10828929	0.82[YRI][hapmap]
rs10828931	0.82[YRI][hapmap]
rs10828932	0.81[YRI][hapmap]
rs10828934	0.82[YRI][hapmap]
rs10828938	0.88[YRI][hapmap]
rs11014866	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014873	1.00[CHB][hapmap]
rs11014874	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014875	0.87[YRI][hapmap]
rs11014882	0.82[YRI][hapmap]
rs11014891	0.88[YRI][hapmap]
rs11014893	0.82[YRI][hapmap]
rs11014894	0.88[YRI][hapmap]
rs11014896	0.88[YRI][hapmap]
rs11014897	0.81[YRI][hapmap]
rs11014898	0.88[YRI][hapmap]
rs11014900	0.88[YRI][hapmap]
rs11014905	0.82[YRI][hapmap]
rs11812152	1.00[CHB][hapmap]
rs11812332	1.00[CHB][hapmap]
rs11812543	1.00[CHB][hapmap]
rs11812817	1.00[CHB][hapmap]
rs11812818	1.00[CHB][hapmap]
rs11813672	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813728	1.00[CHB][hapmap]
rs11814242	0.95[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11816237	1.00[CHB][hapmap]
rs11816461	1.00[CHB][hapmap]
rs11816664	0.95[EUR][1000 genomes]
rs11818977	1.00[CHB][hapmap]
rs11819181	1.00[CHB][hapmap]
rs11819262	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819744	1.00[CHB][hapmap]
rs12240899	0.88[YRI][hapmap]
rs12245237	1.00[CHB][hapmap]
rs12245940	0.86[AFR][1000 genomes]
rs12246034	0.88[YRI][hapmap]
rs12250378	0.87[YRI][hapmap]
rs12252321	0.88[YRI][hapmap]
rs12252394	0.88[YRI][hapmap]
rs12254208	0.87[YRI][hapmap]
rs12257119	0.82[YRI][hapmap]
rs12258870	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12259136	0.94[YRI][hapmap]
rs12259899	1.00[CHB][hapmap]
rs12263132	0.82[YRI][hapmap]
rs12265280	0.88[YRI][hapmap]
rs12268406	0.82[YRI][hapmap]
rs12268729	0.94[YRI][hapmap]
rs1339802	0.81[YRI][hapmap]
rs1521037	1.00[CHB][hapmap]
rs1521038	1.00[CHB][hapmap]
rs1546698	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1546699	0.87[AFR][1000 genomes]
rs1546700	0.82[YRI][hapmap];0.87[AFR][1000 genomes]
rs1591905	0.91[AFR][1000 genomes]
rs16926502	0.87[YRI][hapmap]
rs16926512	0.82[YRI][hapmap]
rs16926590	1.00[CHB][hapmap]
rs17666132	1.00[CHB][hapmap]
rs17666138	1.00[CHB][hapmap]
rs17666263	1.00[CHB][hapmap]
rs17738738	1.00[CHB][hapmap]
rs17738768	1.00[CHB][hapmap]
rs17738883	1.00[CHB][hapmap]
rs17738907	1.00[CHB][hapmap]
rs17738949	1.00[CHB][hapmap]
rs17739436	1.00[CHB][hapmap]
rs17739453	1.00[CHB][hapmap]
rs2222351	0.96[EUR][1000 genomes]
rs2437383	1.00[CHB][hapmap]
rs2505429	1.00[CHB][hapmap]
rs28657699	0.83[AFR][1000 genomes]
rs3897758	0.96[EUR][1000 genomes]
rs41279908	0.86[EUR][1000 genomes]
rs41454449	1.00[CHB][hapmap]
rs4370835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs57687518	0.89[EUR][1000 genomes]
rs59646929	0.96[EUR][1000 genomes]
rs6482521	1.00[CHB][hapmap]
rs6482522	1.00[CHB][hapmap]
rs6482526	0.81[YRI][hapmap]
rs6482527	0.82[YRI][hapmap]
rs7069867	0.93[AFR][1000 genomes]
rs7074143	1.00[CHB][hapmap]
rs7077414	0.88[YRI][hapmap]
rs7089743	0.82[YRI][hapmap]
rs7093785	1.00[CHB][hapmap]
rs72787349	0.86[EUR][1000 genomes]
rs72787350	0.86[EUR][1000 genomes]
rs72789947	0.96[EUR][1000 genomes]
rs72789954	0.96[EUR][1000 genomes]
rs72789957	0.96[EUR][1000 genomes]
rs72789960	0.96[EUR][1000 genomes]
rs72793209	0.92[EUR][1000 genomes]
rs72793210	0.92[EUR][1000 genomes]
rs72793214	0.92[EUR][1000 genomes]
rs72793215	0.92[EUR][1000 genomes]
rs72793218	0.86[EUR][1000 genomes]
rs72793939	0.96[EUR][1000 genomes]
rs72793940	0.96[EUR][1000 genomes]
rs72793945	0.96[EUR][1000 genomes]
rs72793992	0.96[EUR][1000 genomes]
rs72797856	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126361	0.95[EUR][1000 genomes]
rs74126386	0.92[EUR][1000 genomes]
rs74126397	0.86[EUR][1000 genomes]
rs74126400	0.86[EUR][1000 genomes]
rs7476089	1.00[CHB][hapmap]
rs7895308	0.82[YRI][hapmap]
rs7903177	0.88[YRI][hapmap]
rs7904021	0.88[YRI][hapmap]
rs7905783	0.82[YRI][hapmap]
rs7906451	0.88[YRI][hapmap]
rs7909349	1.00[CHB][hapmap]
rs7911905	0.91[AFR][1000 genomes]
rs7913074	0.88[YRI][hapmap]
rs7914207	0.87[YRI][hapmap]
rs7916305	0.82[YRI][hapmap]
rs7918334	0.88[YRI][hapmap]
rs7918480	0.95[LWK][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs7919219	0.87[YRI][hapmap]
rs872752	1.00[CHB][hapmap]
rs872753	1.00[CHB][hapmap]
rs872754	1.00[CHB][hapmap]
rs946688	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26229800-26233600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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