Variant report

Variant	rs12258870
Chromosome Location	chr10:26238936-26238937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs10508713	1.00[CHB][hapmap]
rs11014866	1.00[CHB][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11014874	1.00[ASN][1000 genomes]
rs11014875	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs11812152	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11812332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs11812335	0.92[EUR][1000 genomes]
rs11812543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs11812786	0.93[EUR][1000 genomes]
rs11812816	0.94[EUR][1000 genomes]
rs11812817	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11812818	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11813672	1.00[ASN][1000 genomes]
rs11813728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs11813730	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs11816237	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11816333	0.95[EUR][1000 genomes]
rs11816461	1.00[CHB][hapmap]
rs11818587	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11818765	0.93[EUR][1000 genomes]
rs11818977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs11819096	0.93[EUR][1000 genomes]
rs11819181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs11819262	1.00[ASN][1000 genomes]
rs11819744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs12250378	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs1521037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs1521038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs1591907	0.95[EUR][1000 genomes]
rs16926502	0.84[YRI][hapmap]
rs16926590	1.00[CHB][hapmap]
rs17666095	0.92[EUR][1000 genomes]
rs17666132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs17666138	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs17666263	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs17738738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs17738768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs17738883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs17738907	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs17738937	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17738949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs17739436	1.00[CHB][hapmap]
rs17739453	1.00[CHB][hapmap]
rs2185325	1.00[CHB][hapmap]
rs2368119	0.95[EUR][1000 genomes]
rs34028452	0.94[EUR][1000 genomes]
rs34044028	0.94[EUR][1000 genomes]
rs34233278	0.94[EUR][1000 genomes]
rs34508968	0.94[EUR][1000 genomes]
rs35434254	0.94[EUR][1000 genomes]
rs35910926	0.94[EUR][1000 genomes]
rs36015296	0.94[EUR][1000 genomes]
rs41454449	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs4370835	1.00[CHB][hapmap]
rs55839812	0.95[EUR][1000 genomes]
rs55841525	0.95[EUR][1000 genomes]
rs55852999	0.95[EUR][1000 genomes]
rs55947731	0.93[EUR][1000 genomes]
rs56093148	0.93[EUR][1000 genomes]
rs56278522	0.94[EUR][1000 genomes]
rs56284120	0.95[EUR][1000 genomes]
rs56352608	0.95[EUR][1000 genomes]
rs56387846	0.95[EUR][1000 genomes]
rs57328269	0.95[EUR][1000 genomes]
rs57347362	0.94[EUR][1000 genomes]
rs57681362	0.95[EUR][1000 genomes]
rs58003294	0.92[EUR][1000 genomes]
rs58129501	0.93[EUR][1000 genomes]
rs58231370	0.95[EUR][1000 genomes]
rs58552357	0.94[EUR][1000 genomes]
rs59085026	0.95[EUR][1000 genomes]
rs59914029	0.94[EUR][1000 genomes]
rs60489830	0.95[EUR][1000 genomes]
rs60781504	0.95[EUR][1000 genomes]
rs61112806	0.92[EUR][1000 genomes]
rs61247361	0.95[EUR][1000 genomes]
rs61520006	0.95[EUR][1000 genomes]
rs7070437	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7074143	1.00[CHB][hapmap]
rs72789949	0.95[EUR][1000 genomes]
rs72791165	0.93[EUR][1000 genomes]
rs72791168	0.94[EUR][1000 genomes]
rs72793941	0.95[EUR][1000 genomes]
rs72793942	0.95[EUR][1000 genomes]
rs72793944	0.95[EUR][1000 genomes]
rs72793946	0.95[EUR][1000 genomes]
rs72793947	0.95[EUR][1000 genomes]
rs72793948	0.95[EUR][1000 genomes]
rs72793949	0.95[EUR][1000 genomes]
rs72793950	0.95[EUR][1000 genomes]
rs72793951	0.95[EUR][1000 genomes]
rs72793953	0.95[EUR][1000 genomes]
rs72793954	0.95[EUR][1000 genomes]
rs72793955	0.95[EUR][1000 genomes]
rs72793956	0.94[EUR][1000 genomes]
rs72793957	0.95[EUR][1000 genomes]
rs72793958	0.95[EUR][1000 genomes]
rs72793960	0.90[EUR][1000 genomes]
rs72793962	0.93[EUR][1000 genomes]
rs72793963	0.93[EUR][1000 genomes]
rs72793964	0.93[EUR][1000 genomes]
rs72793966	0.93[EUR][1000 genomes]
rs72793968	0.93[EUR][1000 genomes]
rs72793970	0.93[EUR][1000 genomes]
rs72793972	0.93[EUR][1000 genomes]
rs72793973	0.94[EUR][1000 genomes]
rs72793974	0.94[EUR][1000 genomes]
rs72793975	0.94[EUR][1000 genomes]
rs72793976	0.94[EUR][1000 genomes]
rs72793977	0.95[EUR][1000 genomes]
rs72793978	0.95[EUR][1000 genomes]
rs72793979	0.95[EUR][1000 genomes]
rs72793981	0.95[EUR][1000 genomes]
rs72793982	0.95[EUR][1000 genomes]
rs72793983	0.95[EUR][1000 genomes]
rs72793985	0.95[EUR][1000 genomes]
rs72793986	0.95[EUR][1000 genomes]
rs72793990	0.95[EUR][1000 genomes]
rs72793991	0.95[EUR][1000 genomes]
rs72793994	0.95[EUR][1000 genomes]
rs72793999	0.95[EUR][1000 genomes]
rs72795806	0.92[EUR][1000 genomes]
rs72795808	0.95[EUR][1000 genomes]
rs72795809	0.94[EUR][1000 genomes]
rs72795811	0.94[EUR][1000 genomes]
rs72795813	0.94[EUR][1000 genomes]
rs72795815	0.92[EUR][1000 genomes]
rs72795817	0.94[EUR][1000 genomes]
rs72795819	0.94[EUR][1000 genomes]
rs72795820	0.94[EUR][1000 genomes]
rs72795825	0.94[EUR][1000 genomes]
rs72795826	0.94[EUR][1000 genomes]
rs72795833	0.94[EUR][1000 genomes]
rs72795834	0.94[EUR][1000 genomes]
rs72795835	0.90[EUR][1000 genomes]
rs72795837	0.89[EUR][1000 genomes]
rs72795838	0.93[EUR][1000 genomes]
rs72795840	0.94[EUR][1000 genomes]
rs72795845	0.94[EUR][1000 genomes]
rs72795846	0.93[EUR][1000 genomes]
rs72795848	0.94[EUR][1000 genomes]
rs72795849	0.91[EUR][1000 genomes]
rs72797856	1.00[ASN][1000 genomes]
rs74126331	0.95[EUR][1000 genomes]
rs74126374	0.87[EUR][1000 genomes]
rs7476089	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs7909349	1.00[CHB][hapmap]
rs7914207	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26237000-26240800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26238400-26240200	Enhancers	Pancreatic Islets	Pancreatic Islet

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