Variant report

Variant	rs11014866
Chromosome Location	chr10:26224097-26224098
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:26223811-26224167	H1-hESC	embryonic stem cell:	n/a	chr10:26223971-26223984
2	MAX	chr10:26222970-26224104	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr10:26223732-26224115	A549	lung:	n/a	chr10:26223972-26223990
4	CTCF	chr10:26223706-26224110	Medullo	brain:	n/a	chr10:26223972-26223990
5	RAD21	chr10:26223717-26224172	H1-hESC	embryonic stem cell:	n/a	chr10:26223971-26223984
6	HDAC2	chr10:26223777-26224164	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr10:26223709-26224169	H1-neurons	neurons:	n/a	n/a
8	CTCF	chr10:26224000-26224150	GM12872	blood:	n/a	n/a
9	CTCF	chr10:26223758-26224130	H1-hESC	embryonic stem cell:	n/a	chr10:26223972-26223990
10	CTCF	chr10:26224020-26224170	HAc	cerebellar:	n/a	n/a
11	E2F6	chr10:26222926-26224162	H1-hESC	embryonic stem cell:	n/a	chr10:26223487-26223494 chr10:26223306-26223316 chr10:26223245-26223257 chr10:26223487-26223494 chr10:26223487-26223494 chr10:26223575-26223584
12	CHD2	chr10:26223789-26224126	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr10:26223755-26224104	K562	blood:	n/a	chr10:26223972-26223990
14	CTCF	chr10:26223821-26224110	GM19238	blood:	n/a	chr10:26223972-26223990
15	MYC	chr10:26223947-26224125	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr10:26223754-26224139	K562	blood:	n/a	chr10:26223972-26223990
17	BACH1	chr10:26222706-26224176	H1-hESC	embryonic stem cell:	n/a	n/a
18	CTCF	chr10:26223960-26224110	HUVEC	blood vessel:	n/a	chr10:26223972-26223990
19	CTCF	chr10:26223824-26224102	GM12891	blood:	n/a	chr10:26223972-26223990
20	RAD21	chr10:26223697-26224224	H1-hESC	embryonic stem cell:	n/a	chr10:26223971-26223984
21	CTCF	chr10:26223692-26224357	A549	lung:	n/a	chr10:26223972-26223990
22	E2F6	chr10:26222750-26224177	H1-hESC	embryonic stem cell:	n/a	chr10:26223487-26223494 chr10:26223306-26223316 chr10:26223245-26223257 chr10:26223487-26223494 chr10:26223487-26223494 chr10:26223575-26223584
23	KAP1	chr10:26223811-26224206	U2OS	brain:	n/a	chr10:26224148-26224156
24	ZNF143	chr10:26223661-26224113	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr10:26223960-26224110	HBMEC	blood vessel:	n/a	chr10:26223972-26223990
26	CTCF	chr10:26223822-26224130	GM12878	blood:	n/a	chr10:26223972-26223990
27	CTCF	chr10:26223980-26224130	A549	lung:	n/a	n/a
28	CTCF	chr10:26223960-26224110	GM12875	blood:	n/a	chr10:26223972-26223990
29	CTCF	chr10:26223880-26224104	GM10248	blood:	n/a	chr10:26223972-26223990
30	CTCF	chr10:26224060-26224210	A549	lung:	n/a	n/a
31	ZNF263	chr10:26222628-26224162	HEK293-T-REx	kidney:	n/a	chr10:26223905-26223914 chr10:26223543-26223552 chr10:26223831-26223852
32	CTCF	chr10:26223868-26224097	GM12878	blood:	n/a	chr10:26223972-26223990
33	CTCF	chr10:26223840-26224139	K562	blood:	n/a	chr10:26223972-26223990
34	MAX	chr10:26223702-26224260	A549	lung:	n/a	n/a
35	CTCF	chr10:26223960-26224110	BE2_C	brain:	n/a	chr10:26223972-26223990
36	HMGN3	chr10:26223835-26224153	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000226304	TF binding region
MYO3A	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11014874	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014875	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs11812152	1.00[CHB][hapmap]
rs11812332	1.00[CHB][hapmap]
rs11812543	1.00[CHB][hapmap]
rs11813672	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813728	1.00[CHB][hapmap]
rs11816461	1.00[CHB][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs11816664	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11818458	0.81[YRI][hapmap]
rs11818977	1.00[CHB][hapmap]
rs11819181	1.00[CHB][hapmap]
rs11819262	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819744	1.00[CHB][hapmap]
rs12250378	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs12258870	1.00[CHB][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1339802	0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs1521037	1.00[CHB][hapmap]
rs1521038	1.00[CHB][hapmap]
rs16926502	0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs16926590	1.00[CHB][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs17666132	1.00[CHB][hapmap]
rs17666138	1.00[CHB][hapmap]
rs17666263	1.00[CHB][hapmap]
rs17738738	1.00[CHB][hapmap]
rs17738768	1.00[CHB][hapmap]
rs17738883	1.00[CHB][hapmap]
rs17738907	1.00[CHB][hapmap]
rs17738949	1.00[CHB][hapmap]
rs17739436	1.00[CHB][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs17739453	1.00[CHB][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs2185325	1.00[CHB][hapmap]
rs2222351	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3897758	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41279908	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41454449	1.00[CHB][hapmap]
rs4370835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57687518	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59646929	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7070437	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787349	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72789947	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72789954	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72789957	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72789960	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72793209	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72793210	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72793214	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72793215	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72793218	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72793939	0.96[EUR][1000 genomes]
rs72793940	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72793945	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72793992	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72797856	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126361	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74126386	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74126397	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7476089	1.00[CHB][hapmap]
rs7909349	1.00[CHB][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs7914207	0.88[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26222400-26224200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr10:26222400-26224200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:26222400-26224800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr10:26222400-26228000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr10:26222600-26224200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr10:26222600-26224200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr10:26222600-26224200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:26222600-26224200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:26222600-26224200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
10	chr10:26222600-26224400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:26222800-26224200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:26222800-26224200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
13	chr10:26222800-26224200	Active TSS	Brain Anterior Caudate	brain
14	chr10:26222800-26224200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:26222800-26224200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr10:26222800-26224200	Bivalent Enhancer	Fetal Brain Male	brain
17	chr10:26223000-26224200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:26223000-26224200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:26223000-26224200	Active TSS	Placenta Amnion	Placenta Amnion
20	chr10:26223000-26224200	Bivalent/Poised TSS	Thymus	Thymus
21	chr10:26223000-26224200	Bivalent/Poised TSS	A549	lung
22	chr10:26223000-26224400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:26223000-26224400	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr10:26223000-26224400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:26223200-26224200	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
26	chr10:26223200-26224200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:26223200-26224200	Bivalent/Poised TSS	Fetal Stomach	stomach
28	chr10:26223200-26224200	Bivalent/Poised TSS	NH-A	brain
29	chr10:26223400-26224200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
30	chr10:26223400-26224200	Bivalent/Poised TSS	Brain Substantia Nigra	brain
31	chr10:26223400-26224200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
32	chr10:26223400-26224200	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr10:26223400-26224200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
34	chr10:26223400-26224400	Bivalent/Poised TSS	Fetal Kidney	kidney
35	chr10:26223600-26224200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:26223600-26224200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
37	chr10:26223600-26224200	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr10:26223600-26224200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
39	chr10:26223600-26224200	Bivalent/Poised TSS	Fetal Lung	lung
40	chr10:26223600-26224400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr10:26223600-26224400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
42	chr10:26223800-26224200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
43	chr10:26223800-26224400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
44	chr10:26223800-26224600	Active TSS	Brain Germinal Matrix	brain
45	chr10:26224000-26224200	Bivalent/Poised TSS	Primary B cells from cord blood	blood
46	chr10:26224000-26224200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:26224000-26224200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
48	chr10:26224000-26224200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:26224000-26224200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:26224000-26224200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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