Variant report

Variant	rs17739453
Chromosome Location	chr10:26422301-26422302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10508713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014866	1.00[CHB][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs11812152	1.00[CHB][hapmap]
rs11812332	1.00[CHB][hapmap]
rs11812370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812543	1.00[CHB][hapmap]
rs11813728	1.00[CHB][hapmap]
rs11815755	0.86[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816461	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816664	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11817896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818977	1.00[CHB][hapmap]
rs11819181	1.00[CHB][hapmap]
rs11819744	1.00[CHB][hapmap]
rs12258870	1.00[CHB][hapmap]
rs1521037	1.00[CHB][hapmap]
rs1521038	1.00[CHB][hapmap]
rs16926590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16926628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16926660	1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16926667	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666132	1.00[CHB][hapmap]
rs17666138	1.00[CHB][hapmap]
rs17666263	1.00[CHB][hapmap]
rs17666893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17667157	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738738	1.00[CHB][hapmap]
rs17738768	1.00[CHB][hapmap]
rs17738883	1.00[CHB][hapmap]
rs17738907	1.00[CHB][hapmap]
rs17738949	1.00[CHB][hapmap]
rs17739436	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1935485	1.00[CHB][hapmap]
rs2185325	1.00[CHB][hapmap]
rs2222351	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3897758	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41279908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41454449	1.00[CHB][hapmap]
rs4370835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56153367	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56234810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140603	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57687518	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58309865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58990448	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59646929	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61284099	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650135	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070437	1.00[CHB][hapmap]
rs7074143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7082557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72787349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72787350	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72789947	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72789954	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72789957	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72789960	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72793209	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72793210	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72793214	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72793215	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72793218	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72793939	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72793940	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72793945	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72793992	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74126361	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74126386	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74126397	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74126400	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74126401	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74126402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74129103	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74129107	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs74129112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476089	1.00[CHB][hapmap]
rs7894269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909349	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26402000-26436200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26410200-26425000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26422200-26422400	ZNF genes & repeats	Aorta	Aorta

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