Variant report

Variant	rs17739680
Chromosome Location	chr10:26465792-26465793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26465564..26468022-chr10:26468180..26471096,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10508713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812370	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11815755	0.89[EUR][1000 genomes]
rs11816461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11816664	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11817896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926590	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16926628	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926660	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16926667	0.89[EUR][1000 genomes]
rs17666893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17667157	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17739436	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17739453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1935485	1.00[ASN][1000 genomes]
rs2222351	0.96[AMR][1000 genomes]
rs3897758	1.00[AMR][1000 genomes]
rs41279908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4370835	1.00[AMR][1000 genomes]
rs56153367	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56234810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57140603	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57687518	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58309865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58990448	0.89[EUR][1000 genomes]
rs59646929	1.00[AMR][1000 genomes]
rs61284099	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6650135	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7074143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72787350	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72789947	0.96[AMR][1000 genomes]
rs72789954	1.00[AMR][1000 genomes]
rs72789957	0.96[AMR][1000 genomes]
rs72789960	0.96[AMR][1000 genomes]
rs72793209	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72793210	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72793214	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72793215	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72793218	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72793939	0.92[AMR][1000 genomes]
rs72793940	1.00[AMR][1000 genomes]
rs72793945	0.96[AMR][1000 genomes]
rs72793992	1.00[AMR][1000 genomes]
rs74126361	1.00[AMR][1000 genomes]
rs74126386	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74126397	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74126400	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74126401	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74126402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74129103	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74129107	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74129109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74129112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74129113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7894269	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7909349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26453800-26466800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26459400-26466800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:26461400-26466800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:26464600-26478000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:26465000-26466800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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